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Merge branch 'IQSS:develop' into remove-gpl-code
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bencomp authored Sep 12, 2023
2 parents ddfae97 + a16f86f commit 0087fb8
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4 changes: 4 additions & 0 deletions .env
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APP_IMAGE=gdcc/dataverse:unstable
POSTGRES_VERSION=13
DATAVERSE_DB_USER=dataverse
SOLR_VERSION=9.3.0
4 changes: 3 additions & 1 deletion .github/ISSUE_TEMPLATE/bug_report.md
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---
name: Bug report
about: Did you encounter something unexpected or incorrect in the Dataverse software? We'd like to hear about it!
about: Did you encounter something unexpected or incorrect in the Dataverse software?
We'd like to hear about it!
title: ''
labels: ''
assignees: ''

---

<!--
Thank you for contributing to the Dataverse Project through the creation of a bug report!
Expand Down
3 changes: 2 additions & 1 deletion .github/ISSUE_TEMPLATE/feature_request.md
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assignees: ''

---

<!--
Thank you for contributing to the Dataverse Project through the creation of a feature request!
Expand All @@ -32,4 +33,4 @@ Start below this comment section.
**Any brand new behavior do you want to add to Dataverse?**


**Any related open or closed issues to this feature request?**
**Any open or closed issues related to this feature request?**
7 changes: 7 additions & 0 deletions .github/SECURITY.md
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# Security

To report a security vulnerability please email security@dataverse.org as explained at https://guides.dataverse.org/en/latest/installation/config.html#reporting-security-issues

Advice on securing your installation can be found at https://guides.dataverse.org/en/latest/installation/config.html#securing-your-installation

Security practices and procedures used by the Dataverse team are described at https://guides.dataverse.org/en/latest/developers/security.html
96 changes: 96 additions & 0 deletions .github/workflows/container_app_pr.yml
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---
name: Preview Application Container Image

on:
# We only run the push commands if we are asked to by an issue comment with the correct command.
# This workflow is always taken from the default branch and runs in repo context with access to secrets.
repository_dispatch:
types: [ push-image-command ]

env:
IMAGE_TAG: unstable
BASE_IMAGE_TAG: unstable
PLATFORMS: "linux/amd64,linux/arm64"

jobs:
deploy:
name: "Package & Push"
runs-on: ubuntu-latest
# Only run in upstream repo - avoid unnecessary runs in forks
if: ${{ github.repository_owner == 'IQSS' }}
steps:
# Checkout the pull request code as when merged
- uses: actions/checkout@v3
with:
ref: 'refs/pull/${{ github.event.client_payload.pull_request.number }}/merge'
- uses: actions/setup-java@v3
with:
java-version: "17"
distribution: 'adopt'
- uses: actions/cache@v3
with:
path: ~/.m2
key: ${{ runner.os }}-m2-${{ hashFiles('**/pom.xml') }}
restore-keys: ${{ runner.os }}-m2

# Note: Accessing, pushing tags etc. to GHCR will only succeed in upstream because secrets.
- name: Login to Github Container Registry
uses: docker/login-action@v2
with:
registry: ghcr.io
username: ${{ secrets.GHCR_USERNAME }}
password: ${{ secrets.GHCR_TOKEN }}

- name: Set up QEMU for multi-arch builds
uses: docker/setup-qemu-action@v2

# Get the image tag from either the command or default to branch name (Not used for now)
#- name: Get the target tag name
# id: vars
# run: |
# tag=${{ github.event.client_payload.slash_command.args.named.tag }}
# if [[ -z "$tag" ]]; then tag=$(echo "${{ github.event.client_payload.pull_request.head.ref }}" | tr '\\/_:&+,;#*' '-'); fi
# echo "IMAGE_TAG=$tag" >> $GITHUB_ENV

# Set image tag to branch name of the PR
- name: Set image tag to branch name
run: |
echo "IMAGE_TAG=$(echo "${{ github.event.client_payload.pull_request.head.ref }}" | tr '\\/_:&+,;#*' '-')" >> $GITHUB_ENV
# Necessary to split as otherwise the submodules are not available (deploy skips install)
- name: Build app and configbaker container image with local architecture and submodules (profile will skip tests)
run: >
mvn -B -f modules/dataverse-parent
-P ct -pl edu.harvard.iq:dataverse -am
install
- name: Deploy multi-arch application and configbaker container image
run: >
mvn
-Dapp.image.tag=${{ env.IMAGE_TAG }} -Dbase.image.tag=${{ env.BASE_IMAGE_TAG }}
-Ddocker.registry=ghcr.io -Ddocker.platforms=${{ env.PLATFORMS }}
-Pct deploy
- uses: marocchino/sticky-pull-request-comment@v2
with:
header: registry-push
hide_and_recreate: true
hide_classify: "OUTDATED"
number: ${{ github.event.client_payload.pull_request.number }}
message: |
:package: Pushed preview images as
```
ghcr.io/gdcc/dataverse:${{ env.IMAGE_TAG }}
```
```
ghcr.io/gdcc/configbaker:${{ env.IMAGE_TAG }}
```
:ship: [See on GHCR](https://github.com/orgs/gdcc/packages/container). Use by referencing with full name as printed above, mind the registry name.
# Leave a note when things have gone sideways
- uses: peter-evans/create-or-update-comment@v3
if: ${{ failure() }}
with:
issue-number: ${{ github.event.client_payload.pull_request.number }}
body: >
:package: Could not push preview images :disappointed:.
See [log](https://github.com/IQSS/dataverse/actions/runs/${{ github.run_id }}) for details.
171 changes: 171 additions & 0 deletions .github/workflows/container_app_push.yml
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---
name: Application Container Image

on:
# We are deliberately *not* running on push events here to avoid double runs.
# Instead, push events will trigger from the base image and maven unit tests via workflow_call.
workflow_call:
pull_request:
branches:
- develop
- master
paths:
- 'src/main/docker/**'
- 'modules/container-configbaker/**'
- '.github/workflows/container_app_push.yml'

env:
IMAGE_TAG: unstable
BASE_IMAGE_TAG: unstable
REGISTRY: "" # Empty means default to Docker Hub
PLATFORMS: "linux/amd64,linux/arm64"
MASTER_BRANCH_TAG: alpha

jobs:
build:
name: "Build & Test"
runs-on: ubuntu-latest
permissions:
contents: read
packages: write
pull-requests: write
# Only run in upstream repo - avoid unnecessary runs in forks
if: ${{ github.repository_owner == 'IQSS' }}

steps:
- name: Checkout repository
uses: actions/checkout@v3

- name: Set up JDK
uses: actions/setup-java@v3
with:
java-version: "17"
distribution: temurin
cache: maven

- name: Build app and configbaker container image with local architecture and submodules (profile will skip tests)
run: >
mvn -B -f modules/dataverse-parent
-P ct -pl edu.harvard.iq:dataverse -am
install
# TODO: add smoke / integration testing here (add "-Pct -DskipIntegrationTests=false")

hub-description:
needs: build
name: Push image descriptions to Docker Hub
# Run this when triggered via push or schedule as reused workflow from base / maven unit tests.
# Excluding PRs here means we will have no trouble with secrets access. Also avoid runs in forks.
if: ${{ github.event_name != 'pull_request' && github.ref_name == 'develop' && github.repository_owner == 'IQSS' }}
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
- uses: peter-evans/dockerhub-description@v3
with:
username: ${{ secrets.DOCKERHUB_USERNAME }}
password: ${{ secrets.DOCKERHUB_TOKEN }}
repository: gdcc/dataverse
short-description: "Dataverse Application Container Image providing the executable"
readme-filepath: ./src/main/docker/README.md
- uses: peter-evans/dockerhub-description@v3
with:
username: ${{ secrets.DOCKERHUB_USERNAME }}
password: ${{ secrets.DOCKERHUB_TOKEN }}
repository: gdcc/configbaker
short-description: "Dataverse Config Baker Container Image providing setup tooling and more"
readme-filepath: ./modules/container-configbaker/README.md

# Note: Accessing, pushing tags etc. to DockerHub or GHCR will only succeed in upstream because secrets.
# We check for them here and subsequent jobs can rely on this to decide if they shall run.
check-secrets:
needs: build
name: Check for Secrets Availability
runs-on: ubuntu-latest
outputs:
available: ${{ steps.secret-check.outputs.available }}
steps:
- id: secret-check
# perform secret check & put boolean result as an output
shell: bash
run: |
if [ "${{ secrets.DOCKERHUB_TOKEN }}" != '' ]; then
echo "available=true" >> $GITHUB_OUTPUT;
else
echo "available=false" >> $GITHUB_OUTPUT;
fi
deploy:
needs: check-secrets
name: "Package & Publish"
runs-on: ubuntu-latest
# Only run this job if we have access to secrets. This is true for events like push/schedule which run in
# context of the main repo, but for PRs only true if coming from the main repo! Forks have no secret access.
#
# Note: The team's decision was to not auto-deploy an image on any git push where no PR exists (yet).
# Accordingly, only run for push events on branches develop and master.
if: needs.check-secrets.outputs.available == 'true' &&
( github.event_name != 'push' || ( github.event_name == 'push' && contains(fromJSON('["develop", "master"]'), github.ref_name)))
steps:
- uses: actions/checkout@v3
- uses: actions/setup-java@v3
with:
java-version: "17"
distribution: temurin

# Depending on context, we push to different targets. Login accordingly.
- if: github.event_name != 'pull_request'
name: Log in to Docker Hub registry
uses: docker/login-action@v2
with:
username: ${{ secrets.DOCKERHUB_USERNAME }}
password: ${{ secrets.DOCKERHUB_TOKEN }}
- if: ${{ github.event_name == 'pull_request' }}
name: Login to Github Container Registry
uses: docker/login-action@v2
with:
registry: ghcr.io
username: ${{ secrets.GHCR_USERNAME }}
password: ${{ secrets.GHCR_TOKEN }}

- name: Set up QEMU for multi-arch builds
uses: docker/setup-qemu-action@v2

- name: Re-set image tag based on branch (if master)
if: ${{ github.ref_name == 'master' }}
run: |
echo "IMAGE_TAG=${{ env.MASTER_BRANCH_TAG }}" >> $GITHUB_ENV
echo "BASE_IMAGE_TAG=${{ env.MASTER_BRANCH_TAG }}" >> $GITHUB_ENV
- name: Re-set image tag and container registry when on PR
if: ${{ github.event_name == 'pull_request' }}
run: |
echo "IMAGE_TAG=$(echo "$GITHUB_HEAD_REF" | tr '\\/_:&+,;#*' '-')" >> $GITHUB_ENV
echo "REGISTRY='-Ddocker.registry=ghcr.io'" >> $GITHUB_ENV
# Necessary to split as otherwise the submodules are not available (deploy skips install)
- name: Build app and configbaker container image with local architecture and submodules (profile will skip tests)
run: >
mvn -B -f modules/dataverse-parent
-P ct -pl edu.harvard.iq:dataverse -am
install
- name: Deploy multi-arch application and configbaker container image
run: >
mvn
-Dapp.image.tag=${{ env.IMAGE_TAG }} -Dbase.image.tag=${{ env.BASE_IMAGE_TAG }}
${{ env.REGISTRY }} -Ddocker.platforms=${{ env.PLATFORMS }}
-P ct deploy
- uses: marocchino/sticky-pull-request-comment@v2
if: ${{ github.event_name == 'pull_request' }}
with:
header: registry-push
hide_and_recreate: true
hide_classify: "OUTDATED"
message: |
:package: Pushed preview images as
```
ghcr.io/gdcc/dataverse:${{ env.IMAGE_TAG }}
```
```
ghcr.io/gdcc/configbaker:${{ env.IMAGE_TAG }}
```
:ship: [See on GHCR](https://github.com/orgs/gdcc/packages/container). Use by referencing with full name as printed above, mind the registry name.
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