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@uio-bmi

Centre for Bioinformatics, University of Oslo

The hub of bioinformatics and computational biology at the University of Oslo

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  1. immuneML immuneML Public

    immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.

    Python 60 29

  2. compairr compairr Public

    Comparison of Adaptive Immune Receptor Repertoires

    C++ 25 5

  3. graph_peak_caller graph_peak_caller Public

    ChIP-seq peak caller for reads mapped to a graph-based reference genome

    Python 18 8

Repositories

Showing 10 of 82 repositories
  • immuneML Public

    immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.

    uio-bmi/immuneML’s past year of commit activity
    Python 60 AGPL-3.0 29 0 1 Updated Sep 19, 2024
  • tsd-file-api-client Public

    TSD File API Client

    uio-bmi/tsd-file-api-client’s past year of commit activity
    Java 0 MIT 2 2 4 Updated Sep 19, 2024
  • crypt4gh Public

    Crypt4GH standard implementation

    uio-bmi/crypt4gh’s past year of commit activity
    Java 2 MIT 6 2 11 Updated Sep 19, 2024
  • cookiecutter-python-research-project Public

    A cookiecutter for easier continous integration in a research project based on Python code

    uio-bmi/cookiecutter-python-research-project’s past year of commit activity
    Python 1 BSD-3-Clause 0 0 0 Updated Sep 18, 2024
  • IN-BIOSx000 Public Forked from arvindsundaram/IN-BIOSx000

    Course material for the IN-BIOSx000 course "Sequencing technologies, data analysis, and applications" at the University of Oslo

    uio-bmi/IN-BIOSx000’s past year of commit activity
    Python 0 CC0-1.0 11 0 0 Updated Sep 18, 2024
  • stats_for_cs Public

    Accompanying notebooks for the new stats course for computer scientists with simulations

    uio-bmi/stats_for_cs’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Sep 9, 2024
  • fdr_under_dependencies Public
    uio-bmi/fdr_under_dependencies’s past year of commit activity
    Jupyter Notebook 2 MIT 0 0 0 Updated Sep 5, 2024
  • localega-tsd-proxy Public
    uio-bmi/localega-tsd-proxy’s past year of commit activity
    Java 0 MIT 0 6 0 Updated Sep 4, 2024
  • dagsim Public

    A framework and specification language for simulating data based on graphical models

    uio-bmi/dagsim’s past year of commit activity
    Python 18 AGPL-3.0 3 1 0 Updated Aug 28, 2024
  • StarSignDNA Public
    uio-bmi/StarSignDNA’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Aug 26, 2024
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