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@ugSUBMARINE

ugSUBMARINE

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ug StructUral Biology MoleculAR dynamIcs machiNe lEarning

Trying to find solutions for questions concerning proteins

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  1. image-dms image-dms Public

    Predicting mutation effects based on deep mutational scanning data

    Python 3

  2. structural-properties structural-properties Public

    Calculate protein structure properties

    Python

  3. motif-search motif-search Public

    Searching for motifs / side chain constellations in a proteins structure

    Python 1 1

  4. af3jobs af3jobs Public

    Generate JSON job files for AlphaFold3

    Python 1

  5. local-colabfold-server local-colabfold-server Public

    Colabfold / Alphafold3 web interface and job scheduler

    Python

  6. Enzyme-Reaction-Dynamics-Tutorial Enzyme-Reaction-Dynamics-Tutorial Public

    Forked from hopanoid/Enzyme-Reaction-Dynamics-Tutorial

    Tutorial

    Shell

Repositories

Showing 10 of 13 repositories
  • motif-search Public

    Searching for motifs / side chain constellations in a proteins structure

    ugSUBMARINE/motif-search’s past year of commit activity
    Python 1 MIT 1 0 1 Updated Apr 21, 2025
  • local-colabfold-server Public

    Colabfold / Alphafold3 web interface and job scheduler

    ugSUBMARINE/local-colabfold-server’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Apr 15, 2025
  • shortest-path Public

    Find shortest path between selected residues in a protein structure

    ugSUBMARINE/shortest-path’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 26, 2025
  • Enzyme-Reaction-Dynamics-Tutorial Public Forked from hopanoid/Enzyme-Reaction-Dynamics-Tutorial

    Tutorial

    ugSUBMARINE/Enzyme-Reaction-Dynamics-Tutorial’s past year of commit activity
    Shell 0 GPL-3.0 1 0 0 Updated Mar 26, 2025
  • image-dms Public

    Predicting mutation effects based on deep mutational scanning data

    ugSUBMARINE/image-dms’s past year of commit activity
    Python 3 MIT 0 0 5 Updated Mar 21, 2025
  • af3jobs Public

    Generate JSON job files for AlphaFold3

    ugSUBMARINE/af3jobs’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Mar 16, 2025
  • psatm Public

    Create pseudoatoms at the centroid of the catalytic atoms of a residue

    ugSUBMARINE/psatm’s past year of commit activity
    Rust 0 MIT 0 0 0 Updated Feb 17, 2025
  • kmeans Public

    Kmeans for npy distance matrices

    ugSUBMARINE/kmeans’s past year of commit activity
    Rust 0 MIT 0 0 0 Updated Jan 14, 2025
  • mcerp Public Forked from lpldmller/mcerp

    Real-time latin-hypercube sampling-based Monte Carlo ERror Propagation

    ugSUBMARINE/mcerp’s past year of commit activity
    Python 0 BSD-3-Clause 28 0 0 Updated Dec 26, 2024
  • utils Public

    small scripts for different needs

    ugSUBMARINE/utils’s past year of commit activity
    Python 0 MIT 0 0 1 Updated Aug 31, 2024
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