Updates to build for JEDI linking/control, add wcoss2

.gitmodules

@@ -1,7 +1,9 @@
 [submodule "FV3"]
   path = FV3
-  url = https://github.com/NOAA-EMC/fv3atm
-  branch = develop
+  #url = https://github.com/NOAA-EMC/fv3atm
+  #branch = develop
+  url = https://github.com/climbfuji/fv3atm
+  branch = jedi-ufs-dom
 [submodule "NEMS"]
   path = NEMS
   url = https://github.com/NOAA-EMC/NEMS

CMakeLists.txt

@@ -32,6 +32,7 @@ set(QUAD_PRECISION  ON  CACHE BOOL "Enable QUAD_PRECISION (for certain grid metr
 set(REPRO           OFF CACHE BOOL "Enable REPRO mode")
 set(WW3             OFF CACHE BOOL "Enable WW3")
 set(S2S             OFF CACHE BOOL "Enable S2S")
+set(JEDI_DRIVER     OFF CACHE BOOL "Enable JEDI as top level driver")
 set(DATM            OFF CACHE BOOL "Enable Data Atmosphere")
 
 ###############################################################################
@@ -132,7 +133,7 @@ endif()
 ### FMS
 ###############################################################################
 include(fms_files.cmake)
-add_library(fms ${fms_src_files})
+add_library(fms ${fms_src_files} ${fms_headers})
 # stupid cmake can not figure out dependency of fft.F90 on fft99.F90 because 'use fft99_mod' is inside ifdefs
 set_property(SOURCE FMS/fft/fft.F90 APPEND_STRING PROPERTY COMPILE_FLAGS "-DSGICRAY=0 -DNAGFFT=0")
 
@@ -153,16 +154,20 @@ target_compile_definitions(fms PRIVATE "${_fms_defs_private}")
 
 target_include_directories(fms PUBLIC $<BUILD_INTERFACE:${CMAKE_CURRENT_SOURCE_DIR}/FMS/include>
                                       $<BUILD_INTERFACE:${CMAKE_CURRENT_SOURCE_DIR}/FMS/fms>
+                                      $<BUILD_INTERFACE:${CMAKE_CURRENT_SOURCE_DIR}/FMS/fms2_io/include>
+                                      $<BUILD_INTERFACE:${CMAKE_CURRENT_BINARY_DIR}/FMS/mod>
                                       $<BUILD_INTERFACE:${CMAKE_CURRENT_SOURCE_DIR}/FMS/mpp/include>)
+target_include_directories(fms INTERFACE 
+                                         $<INSTALL_INTERFACE:${CMAKE_INSTALL_PREFIX}/include>
+                                         $<INSTALL_INTERFACE:${CMAKE_INSTALL_PREFIX}/mod>)
 target_link_libraries(fms PUBLIC MPI::MPI_Fortran
                                  NetCDF::NetCDF_Fortran)
 if(OpenMP_Fortran_FOUND)
   target_link_libraries(fms PRIVATE OpenMP::OpenMP_Fortran)
 endif()
 set_target_properties(fms PROPERTIES ARCHIVE_OUTPUT_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/FMS)
 set_target_properties(fms PROPERTIES Fortran_MODULE_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/FMS/mod)
-target_include_directories(fms INTERFACE $<BUILD_INTERFACE:${CMAKE_CURRENT_BINARY_DIR}/FMS/mod>
-                                         $<INSTALL_INTERFACE:FMS/mod>)
+set_target_properties(fms PROPERTIES PUBLIC_HEADER "${fms_headers}" )
 
 ###############################################################################
 ### stochastic_physics
@@ -189,6 +194,8 @@ if(WW3)
       set(WW3_COMP "hera")
     elseif(${CMAKE_Platform} STREQUAL "orion.intel")
       set(WW3_COMP "orion")
+    elseif(${CMAKE_Platform} STREQUAL "wcoss2")
+      set(WW3_COMP "wcoss_cray")
     elseif(${CMAKE_Platform} MATCHES "linux*" OR ${CMAKE_Platform} MATCHES "macosx*")
       if (CMAKE_Fortran_COMPILER_ID MATCHES "GNU")
         set(WW3_COMP "gnu")
@@ -259,7 +266,9 @@ else()
   list(APPEND _ufs_defs_private FRONT_FV3=fv3gfs_cap_mod)
   add_dependencies(ufs fv3atm)
 endif()
-
+if(JEDI_DRIVER)
+  list(APPEND _ufs_defs_private JEDI_DRIVER=ON)
+endif()
 set_target_properties(ufs PROPERTIES Fortran_MODULE_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/mod)
 target_include_directories(ufs PRIVATE ${CMAKE_CURRENT_BINARY_DIR}/NEMS/src)
 
@@ -314,7 +323,7 @@ endif()
 target_compile_definitions(ufs_model PRIVATE "${_ufs_model_defs_private}")
 
 if(DATM)
-  target_link_libraries(ufs_model PRIVATE ufs w3nco::w3nco_d)
+  target_link_libraries(ufs_model PUBLIC ufs w3nco::w3nco_d)
 endif()
 target_link_libraries(ufs_model PRIVATE ufs
                                         esmf
@@ -325,17 +334,28 @@ target_link_libraries(ufs_model PRIVATE ufs
 ### Install
 ###############################################################################
 install(
-  TARGETS ufs_model ufs fms
-  EXPORT  ufs-config
-  RUNTIME DESTINATION bin
+  TARGETS fms 
+  EXPORT fms-config
+  LIBRARY DESTINATION lib
+  ARCHIVE DESTINATION lib
+  PUBLIC_HEADER DESTINATION include )
+
+install(DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/FMS/mod DESTINATION ${CMAKE_INSTALL_PREFIX})
+
+install(EXPORT fms-config
+  DESTINATION lib/cmake
+)
+install(
+  TARGETS ufs 
+  EXPORT ufs-config
   LIBRARY DESTINATION lib
   ARCHIVE DESTINATION lib)
 
 install(DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/mod DESTINATION ${CMAKE_INSTALL_PREFIX})
 
-install(EXPORT      ufs-config
-        DESTINATION lib/cmake)
-
+install(EXPORT ufs-config
+  DESTINATION lib/cmake
+)
 ###############################################################################
 ### Done
 ###############################################################################