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Update modulefiles to use spack-stack unified environment (#1707)
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*Modulefiles to be updated through this PR include: Acorn, Gaea, Hera, Jet, Linux, MacOSX, Orion, NOAA Cloud (Parallelworks), and S4 to spack-stack 1.4.1.

*Update Cheyenne's fv3_conf files to address switch from mpt to impi, 

* Update hdf5 version in ufs_common; 

* Update ufs_common, ufs_orion.intel; cherry-pick GOCART parm file and hash updates from Jun's newmapl branch.
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@ulmononian
ulmononian committed Aug 24, 2023
1 parent bef8280 commit 7e9063d
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Showing 30 changed files with 6,172 additions and 5,912 deletions.
32 changes: 11 additions & 21 deletions modulefiles/ufs_acorn.intel.lua
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Expand Up @@ -2,30 +2,20 @@ help([[
Load environment to build UFS on Acorn with Intel compiler
]])

PrgEnv_intel_ver=os.getenv("PrgEnv_intel_ver") or "8.1.0"
load(pathJoin("PrgEnv-intel", PrgEnv_intel_ver))
prepend_path("MODULEPATH", "/lfs/h1/emc/nceplibs/noscrub/spack-stack/spack-stack-1.4.1/envs/ufs-pio-2.5.10/install/modulefiles/Core")

intel_ver=os.getenv("intel_ver") or "19.1.3.304"
load(pathJoin("intel", intel_ver))
load("stack-intel")
load("stack-cray-mpich")
load("stack-python")

craype_ver=os.getenv("craype_ver") or "2.7.13"
load(pathJoin("craype", craype_ver))

cray_mpich_ver=os.getenv("cray_mpich_ver") or "8.1.9"
load(pathJoin("cray-mpich", cray_mpich_ver))

cmake_ver=os.getenv("cmake_ver") or "3.20.2"
load(pathJoin("cmake", cmake_ver))

prepend_path("MODULEPATH", "/lfs/h1/emc/nceplibs/noscrub/hpc-stack/libs/hpc-stack/modulefiles/stack")

hpc_ver=os.getenv("hpc_ver") or "1.2.0"
hpc_intel_ver=os.getenv("hpc_intel_ver") or "19.1.3.304"
hpc_cray_mpich_ver=os.getenv("hpc_cray_mpich_ver") or "8.1.9"
load(pathJoin("hpc", hpc_ver))
load(pathJoin("hpc-intel", hpc_intel_ver))
load(pathJoin("hpc-cray-mpich", hpc_cray_mpich_ver))
--Avoid production installations; use spack-stack only:
remove_path("MODULEPATH", "/apps/ops/prod/libs/modulefiles/compiler/intel/19.1.3.304")
remove_path("MODULEPATH", "/apps/ops/prod/libs/modulefiles/mpi/intel/19.1.3.304/cray-mpich/8.1.4")
remove_path("MODULEPATH", "/apps/ops/prod/libs/modulefiles/mpi/intel/19.1.3.304/cray-mpich/8.1.7")
remove_path("MODULEPATH", "/apps/prod/lmodules/intel/19.1.3.304")
remove_path("MODULEPATH", "/apps/prod/lmodules/INTEL_cray_mpich/19.1.3.304/cray-mpich/8.1.4")

load("cmake")
load("ufs_common")

prepend_path("MODULEPATH", "/lfs/h1/emc/nceplibs/noscrub/UPP_IFI/modulefiles")
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20 changes: 17 additions & 3 deletions modulefiles/ufs_cheyenne.gnu.lua
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Expand Up @@ -33,10 +33,24 @@ load(pathJoin("hpc-gnu", hpc_gnu_ver))
hpc_mpt_ver=os.getenv("hpc_mpt_ver") or "2.25"
load(pathJoin("hpc-mpt", hpc_mpt_ver))

scotch_ver=os.getenv("scotch_ver") or "7.0.3"
load(pathJoin("scotch", scotch_ver))
load("jasper/2.0.25")
load("zlib/1.2.11")
load("hdf5/1.14.0")
load("netcdf/4.9.2")
load("pio/2.5.10")
load("esmf/8.4.2")
load("fms/2023.01")
load("bacio/2.4.1")
load("crtm/2.4.0")
load("g2/3.4.5")
load("g2tmpl/1.10.2")
load("ip/3.3.3")
load("sp/2.3.3")
load("w3emc/2.9.2")
load("gftl-shared/v1.5.0")
load("mapl/2.35.2-esmf-8.4.2")
load("scotch/7.0.3")

load("ufs_common")

setenv("CC", "mpicc")
setenv("CXX", "mpicxx")
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20 changes: 17 additions & 3 deletions modulefiles/ufs_cheyenne.intel.lua
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Expand Up @@ -34,10 +34,24 @@ load(pathJoin("hpc-intel", hpc_intel_ver))
hpc_mpt_ver=os.getenv("hpc_mpt_ver") or "2.25"
load(pathJoin("hpc-mpt", hpc_mpt_ver))

scotch_ver=os.getenv("scotch_ver") or "7.0.3"
load(pathJoin("scotch", scotch_ver))
load("jasper/2.0.25")
load("zlib/1.2.11")
load("hdf5/1.14.0")
load("netcdf/4.9.2")
load("pio/2.5.10")
load("esmf/8.4.2")
load("fms/2023.01")
load("bacio/2.4.1")
load("crtm/2.4.0")
load("g2/3.4.5")
load("g2tmpl/1.10.2")
load("ip/3.3.3")
load("sp/2.3.3")
load("w3emc/2.9.2")
load("gftl-shared/v1.5.0")
load("mapl/2.35.2-esmf-8.4.2")
load("scotch/7.0.3")

load("ufs_common")

setenv("CC", "mpicc")
setenv("CXX", "mpicxx")
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36 changes: 19 additions & 17 deletions modulefiles/ufs_common.lua
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Expand Up @@ -3,23 +3,25 @@ whatis("Description: UFS build environment common libraries")
help([[Load UFS Model common libraries]])

local ufs_modules = {
{["jasper"] = "2.0.25"},
{["zlib"] = "1.2.11"},
{["libpng"] = "1.6.37"},
{["hdf5"] = "1.14.0"},
{["netcdf"] = "4.9.2"},
{["pio"] = "2.5.10"},
{["esmf"] = "8.4.2"},
{["fms"] = "2023.01"},
{["bacio"] = "2.4.1"},
{["crtm"] = "2.4.0"},
{["g2"] = "3.4.5"},
{["g2tmpl"] = "1.10.2"},
{["ip"] = "3.3.3"},
{["sp"] = "2.3.3"},
{["w3emc"] = "2.9.2"},
{["gftl-shared"] = "v1.5.0"},
{["mapl"] = "2.35.2-esmf-8.4.2"},
{["jasper"] = "2.0.32"},
{["zlib"] = "1.2.13"},
{["libpng"] = "1.6.37"},
{["hdf5"] = "1.14.0"},
{["netcdf-c"] = "4.9.2"},
{["netcdf-fortran"] = "4.6.0"},
{["parallelio"] = "2.5.10"},
{["esmf"] = "8.4.2"},
{["fms"] = "2023.01"},
{["bacio"] = "2.4.1"},
{["crtm"] = "2.4.0"},
{["g2"] = "3.4.5"},
{["g2tmpl"] = "1.10.2"},
{["ip"] = "3.3.3"},
{["sp"] = "2.3.3"},
{["w3emc"] = "2.9.2"},
{["gftl-shared"] = "1.5.0"},
{["mapl"] = "2.35.2-esmf-8.4.2"},
{["scotch"] = "7.0.3"},
}

for i = 1, #ufs_modules do
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57 changes: 0 additions & 57 deletions modulefiles/ufs_common_spack.lua
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This file was deleted.

27 changes: 18 additions & 9 deletions modulefiles/ufs_gaea.intel.lua
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Expand Up @@ -5,23 +5,32 @@ help([[

whatis([===[Loads libraries needed for building the UFS Weather Model on Gaea ]===])

load_any(pathJoin("cmake", os.getenv("cmake_ver") or "3.20.1"),"cmake")
unload("intel")
unload("cray-mpich")
unload("cray-python")
unload("darshan")

prepend_path("MODULEPATH","/lustre/f2/dev/role.epic/contrib/hpc-stack/intel-classic-2022.0.2_ncdf492/modulefiles/stack")
load(pathJoin("hpc", os.getenv("hpc_ver") or "1.2.0"))
prepend_path("MODULEPATH", "/lustre/f2/dev/wpo/role.epic/contrib/spack-stack/spack-stack-1.4.1-c4/envs/ufs-pio-2.5.10/install/modulefiles/Core")
prepend_path("MODULEPATH", "/lustre/f2/pdata/esrl/gsd/spack-stack/modulefiles")

load(pathJoin("intel-classic", os.getenv("intel_classic_ver") or "2022.0.2"))
load(pathJoin("cray-mpich", os.getenv("cray_mpich_ver") or "7.7.20"))
load(pathJoin("hpc-intel-classic", os.getenv("hpc_intel_classic_ver") or "2022.0.2"))
load(pathJoin("hpc-cray-mpich", os.getenv("hpc_cray_mpich_ver") or "7.7.20"))
load(pathJoin("libpng", os.getenv("libpng_ver") or "1.6.37"))
stack_intel_ver=os.getenv("stack_intel_ver") or "2022.0.2"
load(pathJoin("stack-intel", stack_intel_ver))

stack_cray_mpich_ver=os.getenv("stack_cray_mpich_ver") or "7.7.20"
load(pathJoin("stack-cray-mpich", stack_cray_mpich_ver))

stack_python_ver=os.getenv("stack_python_ver") or "3.9.12"
load(pathJoin("stack-python", stack_python_ver))

cmake_ver=os.getenv("cmake_ver") or "3.23.1"
load(pathJoin("cmake", cmake_ver))

-- Needed at runtime:
load("alps")

load("ufs_common")

setenv("CC","cc")
setenv("FC","ftn")
setenv("CXX","CC")
setenv("FC","ftn")
setenv("CMAKE_Platform","gaea.intel")
30 changes: 11 additions & 19 deletions modulefiles/ufs_hera.gnu.lua
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Expand Up @@ -2,33 +2,25 @@ help([[
loads UFS Model prerequisites for Hera/GNU
]])

prepend_path("MODULEPATH", "/contrib/sutils/modulefiles")
load("sutils")
prepend_path("MODULEPATH", "/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.4.1/envs/ufs-pio-2.5.10/install/modulefiles/Core")
prepend_path("MODULEPATH", "/scratch1/NCEPDEV/jcsda/jedipara/spack-stack/modulefiles")

cmake_ver=os.getenv("cmake_ver") or "3.20.1"
load(pathJoin("cmake", cmake_ver))

gnu_ver=os.getenv("gnu_ver") or "9.2.0"
load(pathJoin("gnu", gnu_ver))

prepend_path("MODULEPATH", "/scratch1/NCEPDEV/nems/role.epic/hpc-stack/libs/gnu-9.2_ncdf492/modulefiles/stack")
stack_gnu_ver=os.getenv("stack_gnu_ver") or "9.2.0"
load(pathJoin("stack-gcc", stack_gnu_ver))

hpc_ver=os.getenv("hpc_ver") or "1.2.0"
load(pathJoin("hpc", hpc_ver))
stack_openmpi_ver=os.getenv("stack_openmpi_ver") or "4.1.5"
load(pathJoin("stack-openmpi", stack_openmpi_ver))

hpc_gnu_ver=os.getenv("hpc_gnu_ver") or "9.2"
load(pathJoin("hpc-gnu", hpc_gnu_ver))
stack_python_ver=os.getenv("stack_python_ver") or "3.9.12"
load(pathJoin("stack-python", stack_python_ver))

hpc_mpich_ver=os.getenv("hpc_mpich_ver") or "3.3.2"
load(pathJoin("hpc-mpich", hpc_mpich_ver))

scotch_ver=os.getenv("scotch_ver") or "7.0.3"
load(pathJoin("scotch", scotch_ver))
cmake_ver=os.getenv("cmake_ver") or "3.23.1"
load(pathJoin("cmake", cmake_ver))

load("ufs_common")

setenv("CC", "mpicc")
setenv("CXX", "mpicxx")
setenv("CXX", "mpic++")
setenv("FC", "mpif90")
setenv("CMAKE_Platform", "hera.gnu")

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34 changes: 10 additions & 24 deletions modulefiles/ufs_hera.intel.lua
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Expand Up @@ -2,31 +2,20 @@ help([[
loads UFS Model prerequisites for Hera/Intel
]])

prepend_path("MODULEPATH", "/contrib/sutils/modulefiles")
load("sutils")
prepend_path("MODULEPATH", "/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.4.1/envs/ufs-pio-2.5.10/install/modulefiles/Core")
prepend_path("MODULEPATH", "/scratch1/NCEPDEV/jcsda/jedipara/spack-stack/modulefiles")

cmake_ver=os.getenv("cmake_ver") or "3.20.1"
load(pathJoin("cmake", cmake_ver))

intel_ver=os.getenv("intel_ver") or "2022.1.2"
load(pathJoin("intel", intel_ver))

impi_ver=os.getenv("impi_ver") or "2022.1.2"
load(pathJoin("impi", impi_ver))

prepend_path("MODULEPATH", "/scratch1/NCEPDEV/nems/role.epic/hpc-stack/libs/intel-2022.1.2_ncdf492/modulefiles/stack")
stack_intel_ver=os.getenv("stack_intel_ver") or "2021.5.0"
load(pathJoin("stack-intel", stack_intel_ver))

hpc_ver=os.getenv("hpc_ver") or "1.2.0"
load(pathJoin("hpc", hpc_ver))
stack_impi_ver=os.getenv("stack_impi_ver") or "2021.5.1"
load(pathJoin("stack-intel-oneapi-mpi", stack_impi_ver))

hpc_intel_ver=os.getenv("hpc_intel_ver") or "2022.1.2"
load(pathJoin("hpc-intel", hpc_intel_ver))
stack_python_ver=os.getenv("stack_python_ver") or "3.9.12"
load(pathJoin("stack-python", stack_python_ver))

hpc_impi_ver=os.getenv("hpc_impi_ver") or "2022.1.2"
load(pathJoin("hpc-impi", hpc_impi_ver))

scotch_ver=os.getenv("scotch_ver") or "7.0.3"
load(pathJoin("scotch", scotch_ver))
cmake_ver=os.getenv("cmake_ver") or "3.23.1"
load(pathJoin("cmake", cmake_ver))

load("ufs_common")

Expand All @@ -35,7 +24,4 @@ setenv("CXX", "mpiicpc")
setenv("FC", "mpiifort")
setenv("CMAKE_Platform", "hera.intel")

prepend_path("MODULEPATH", "/scratch2/BMC/ifi/modulefiles")
try_load("ifi/20230118-intel-2022.1.2")

whatis("Description: UFS build environment")
25 changes: 10 additions & 15 deletions modulefiles/ufs_jet.intel.lua
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Expand Up @@ -2,22 +2,20 @@ help([[
loads UFS Model prerequisites for Jet/Intel
]])

prepend_path("MODULEPATH", "/contrib/sutils/modulefiles")
load("sutils")
prepend_path("MODULEPATH", "/mnt/lfs4/HFIP/hfv3gfs/role.epic/spack-stack/spack-stack-1.4.1/envs/ufs-pio-2.5.10/install/modulefiles/Core")
prepend_path("MODULEPATH", "/lfs4/HFIP/hfv3gfs/spack-stack/modulefiles")

cmake_ver=os.getenv("cmake_ver") or "3.20.1"
load(pathJoin("cmake", cmake_ver))

prepend_path("MODULEPATH", "/mnt/lfs4/HFIP/hfv3gfs/role.epic/hpc-stack/libs/intel-2022.1.2_ncdf492/modulefiles/stack")
stack_intel_ver=os.getenv("stack_intel_ver") or "2021.5.0"
load(pathJoin("stack-intel", stack_intel_ver))

hpc_ver=os.getenv("hpc_ver") or "1.2.0"
load(pathJoin("hpc", hpc_ver))
stack_impi_ver=os.getenv("stack_impi_ver") or "2021.5.1"
load(pathJoin("stack-intel-oneapi-mpi", stack_impi_ver))

hpc_intel_ver=os.getenv("hpc_intel_ver") or "2022.1.2"
load(pathJoin("hpc-intel", hpc_intel_ver))
stack_python_ver=os.getenv("stack_python_ver") or "3.9.12"
load(pathJoin("stack-python", stack_python_ver))

hpc_impi_ver=os.getenv("hpc_impi_ver") or "2022.1.2"
load(pathJoin("hpc-impi", hpc_impi_ver))
cmake_ver=os.getenv("cmake_ver") or "3.23.1"
load(pathJoin("cmake", cmake_ver))

load("ufs_common")

Expand All @@ -26,7 +24,4 @@ setenv("CXX", "mpiicpc")
setenv("FC", "mpiifort")
setenv("CMAKE_Platform", "jet.intel")

prepend_path("MODULEPATH", "/lfs4/BMC/ifi/modulefiles")
try_load("ifi/20230118-intel-2022.1.2")

whatis("Description: UFS build environment")
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