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Grid and fix file generation for the coupled model #647

Merged
merged 88 commits into from
May 31, 2022
Merged

Grid and fix file generation for the coupled model #647

merged 88 commits into from
May 31, 2022

Commits on Sep 2, 2020

  1. add tripoletools folder with 3 submodules 

    1) CICE5_ICgen: grid generation for cice5/cice6

2) CICE5_gridgen: initial condition generation for cice5/cice6

3) WeightGen: weight generation for:

a) gen_fixgrid and associated fortran code:
a fortran routine to read the MOM6 supergrid
and create a netcdf file which is the basis for the
remaining transformations

b) generate_icocn_weights.ncl:
esmf weight generation for tripole:tripole or
tripole:rectilinear or other grid:grid transformations

c) generate_icemesh.ncl:
generation of the ice_mesh for use by the CMEPS mediator

d) generate_frac_land_weights.sh:
generation of the frac_land weights (the ocean mask on the
fv3 grid) using ESMF_RegridWeightGen

d) cmake_frac_land.ncl:
creation of the 6-tiled land_frac files
    @DeniseWorthen
    DeniseWorthen committed Sep 2, 2020
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Commits on Jun 28, 2021

  1. Merge remote-tracking branch 'upstream/develop' into develop

    @DeniseWorthen
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Commits on Jul 9, 2021

  1. Merge branch 'NOAA-EMC:develop' into develop

    @DeniseWorthen
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Commits on Aug 1, 2021

  1. Merge branch 'NOAA-EMC:develop' into develop

    @DeniseWorthen
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Commits on Dec 15, 2021

  1. Merge branch 'ufs-community:develop' into develop

    @DeniseWorthen
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Commits on Dec 16, 2021

  1. First commit to bring coupled gridgen into ufs utils (ufs-community#143)

    @MinsukJi-NOAA
    MinsukJi-NOAA committed Dec 16, 2021
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Commits on Jan 5, 2022

  1. Merge branch 'ufs-community:develop' into develop

    @DeniseWorthen
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  2. remove tripoletools subdirectory

    @DeniseWorthen
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  3. add initial changes to run from ush

    @DeniseWorthen
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Commits on Jan 19, 2022

  1. Merge branch 'ufs-community:develop' into develop

    @DeniseWorthen
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Commits on Jan 21, 2022

  1. Merge branch 'ufs-community:develop' into develop

    @DeniseWorthen
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  2. Merge branch 'develop' into feature/cpld_gridgen2

    @DeniseWorthen
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  3. add doxygen formatting

    @DeniseWorthen
    DeniseWorthen committed Jan 21, 2022
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Commits on Feb 8, 2022

  1. Merge branch 'ufs-community:develop' into develop

    @DeniseWorthen
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  2. Merge branch 'ufs-community:develop' into feature/cpld_gridgen2

    @DeniseWorthen
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  3. update for 8.2.0 

    * remove ESMF_RegridWeightGenMod use statements after update
of ESMF version
* fix missing shell variable for mx400 case
    @DeniseWorthen
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  4. add skeleton unit test and build

    @DeniseWorthen
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  5. add working unit test for angq

    @DeniseWorthen
    DeniseWorthen committed Feb 8, 2022
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  6. remove cmake/Modules

    @DeniseWorthen
    DeniseWorthen committed Feb 8, 2022
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Commits on Feb 9, 2022

  1. fix bounds error in ftst_find_angq

    @DeniseWorthen
    DeniseWorthen committed Feb 9, 2022
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  2. add LSanSuppress file

    @DeniseWorthen
    DeniseWorthen committed Feb 9, 2022
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  3. remove build of cpld_gridgen unit test

    @DeniseWorthen
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  4. add LSanSuppress to build

    @DeniseWorthen
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  5. switch back to using variables declared in grdvars

    @DeniseWorthen
    DeniseWorthen committed Feb 9, 2022
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  6. switch doxy back to warn as error

    @DeniseWorthen
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  7. fix unit test

    @DeniseWorthen
    DeniseWorthen committed Feb 9, 2022
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Commits on Mar 3, 2022

  1. Merge branch 'ufs-community:develop' into develop

    @DeniseWorthen
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  2. Merge branch 'ufs-community:develop' into feature/cpld_gridgen2

    @DeniseWorthen
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  3. Merge branch 'ufs-community:develop' into feature/addunit

    @DeniseWorthen
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  4. Merge branch 'feature/cpld_gridgen2' into feature/addunit

    @DeniseWorthen
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Commits on Apr 3, 2022

  1. Merge branch 'ufs-community:develop' into develop

    @DeniseWorthen
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  2. Merge branch 'ufs-community:develop' into feature/cpld_gridgen2

    @DeniseWorthen
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  3. Merge branch 'ufs-community:develop' into feature/addunit

    @DeniseWorthen
    DeniseWorthen committed Apr 3, 2022
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  4. update to access netcdf file

    @DeniseWorthen
    DeniseWorthen committed Apr 3, 2022
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  5. use mom6 supergrid file for unit test

    @DeniseWorthen
    DeniseWorthen committed Apr 3, 2022
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Commits on Apr 4, 2022

  1. add netcdf to target_link_libraries

    @DeniseWorthen
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  2. update workflows to download needed file

    @DeniseWorthen
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Commits on Apr 6, 2022

  1. test new location of file for unit test

    @DeniseWorthen
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  2. Add regression test on Hera

    @MinsukJi-NOAA
    MinsukJi-NOAA committed Apr 6, 2022
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  3. Remove unnecessary files

    @MinsukJi-NOAA
    MinsukJi-NOAA committed Apr 6, 2022
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  4. Add successful RT log for Hera

    @MinsukJi-NOAA
    MinsukJi-NOAA committed Apr 6, 2022
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  5. Clean up cpld_gridgen.sh. Redirect run output to a log file

    @MinsukJi-NOAA
    MinsukJi-NOAA committed Apr 6, 2022
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  6. Minor mods to rt.sh. Also add usage and error

    @MinsukJi-NOAA
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Commits on Apr 7, 2022

  1. Remove sleep 30 used for debugging

    @MinsukJi-NOAA
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Commits on Apr 8, 2022

  1. Implement batch job for runs. Other minor changes.

    @MinsukJi-NOAA
    MinsukJi-NOAA committed Apr 8, 2022
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Commits on Apr 9, 2022

  1. Modify batch job error message

    @MinsukJi-NOAA
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Commits on Apr 15, 2022

  1. Change baseline directory in Hera to role account. Add RT log on Hera.

    @MinsukJi-NOAA
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Commits on Apr 18, 2022

  1. Change fix data locations

    @MinsukJi-NOAA
    MinsukJi-NOAA committed Apr 18, 2022
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  2. Add orion variables. Modify build error handling.

    @MinsukJi-NOAA
    MinsukJi-NOAA committed Apr 18, 2022
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  3. Merge with emc develop

    @MinsukJi-NOAA
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Commits on Apr 20, 2022

  1. Merge remote-tracking branch 'MinsukJi/feature/cpld_gridgen2' into fe… 

    …ature/cpld_gridgen2
    @DeniseWorthen
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Commits on Apr 22, 2022

  1. Add nco module to jet. Required to use ncks

    @MinsukJi-NOAA
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Commits on Apr 23, 2022

  1. Change sbatch command. Add Orion RT log.

    @MinsukJi-NOAA
    MinsukJi-NOAA committed Apr 23, 2022
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  2. Add jet changes. Modify sbatch command for hera, orion and jet.

    @MinsukJi-NOAA
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  3. Route nccmp stdout and stderr to log file for better diagnosis

    @MinsukJi-NOAA
    MinsukJi-NOAA committed Apr 23, 2022
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  4. Fix nccmp routing

    @MinsukJi-NOAA
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  5. Add oriong RT log with the latest codes

    @MinsukJi-NOAA
    MinsukJi-NOAA committed Apr 23, 2022
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  6. Add hera RT log with the latest code

    @MinsukJi-NOAA
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Commits on Apr 25, 2022

  1. Add jet RT log with the latest code

    @MinsukJi-NOAA
    MinsukJi-NOAA committed Apr 25, 2022
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  2. Make build optional

    @MinsukJi-NOAA
    MinsukJi-NOAA committed Apr 25, 2022
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  3. Merge remote-tracking branch 'emc/develop' into feature/cpld_gridgen2

    @MinsukJi-NOAA
    MinsukJi-NOAA committed Apr 25, 2022
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Commits on May 4, 2022

  1. Merge branch 'ufs-community:develop' into develop

    @DeniseWorthen
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  2. Merge branch 'develop' into feature/cpld_gridgen2

    @DeniseWorthen
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  3. Merge remote-tracking branch 'MinsukJi/feature/cpld_gridgen2' into fe… 

    …ature/cpld_gridgen2
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Commits on May 6, 2022

  1. Add summary.log file creation for upper-level cron job

    @MinsukJi-NOAA
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  2. Merge pull request #1 from MinsukJi-NOAA/feature/cpld_gridgen_summary 

    Add summary.log file creation for upper-level cron job
    @DeniseWorthen
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Commits on May 9, 2022

  1. Temporarily comment out ulimit command on Orion. 

    Fixes ufs-community#143.
    @GeorgeGayno-NOAA
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  2. Update regression test driver script to run the cpld_gridgen2 

    tests.

Fixes ufs-community#143.
    @GeorgeGayno-NOAA
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  3. Fix bug that determines whether tests pass. 

    Fixes ufs-community#143.
    @GeorgeGayno-NOAA
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  4. Update cpld_gridgen/rt.sh to allow STMP to be passed in 

    from a driver script.

Fixes ufs-community#143.
    @GeorgeGayno-NOAA
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  5. Modify STMP. 

    Fixes ufs-community#143.
    @GeorgeGayno-NOAA
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  6. Adjust remaining STMP variables. 

    Fixes ufs-community#143.
    @GeorgeGayno-NOAA
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  7. Update definition of STMP. 

    Fixes ufs-community#143.
    @GeorgeGayno-NOAA
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Commits on May 10, 2022

  1. Update README.md 

    Fixes ufs-community#143.
    @GeorgeGayno-NOAA
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Commits on May 11, 2022

  1. Remove namelist from source code directory. 

    Fixes ufs-community#143.
    @GeorgeGayno-NOAA
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Commits on May 13, 2022

  1. Merge branch 'develop' into feature/cpld_gridgen2

    @GeorgeGayno-NOAA
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  2. fix argument declaration

    @DeniseWorthen
    DeniseWorthen committed May 13, 2022
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  3. Merge branch 'ufs-community:develop' into develop

    @DeniseWorthen
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Commits on May 16, 2022

  1. Remove test code from rt.sh 

    Fixes ufs-community#143.
    @GeorgeGayno-NOAA
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  2. Update to invoke executables on Orion using 'srun'. 

    Fixes ufs-community#143.
    @GeorgeGayno-NOAA
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Commits on May 26, 2022

  1. Merge branch 'ufs-community:develop' into develop

    @DeniseWorthen
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Commits on May 27, 2022

  1. ensure job runs as serial; deallocate arrays sooner

    @DeniseWorthen
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  2. fix check for number of PEs; update rt.sh for hera,orion,jet

    @DeniseWorthen
    DeniseWorthen committed May 27, 2022
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  3. Merge branch 'develop' into feature/cpld_gridgen2 

    Conflicts:
	tests/CMakeLists.txt
    @DeniseWorthen
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  4. Merge remote-tracking branch 'origin/feature/addunit_ncfile' into fea… 

    …ture/cpld_gridgen2
    @DeniseWorthen
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  5. fix unit test

    @DeniseWorthen
    DeniseWorthen committed May 27, 2022
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  6. reinstate nco module

    @DeniseWorthen
    DeniseWorthen committed May 27, 2022
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Commits on May 31, 2022

  1. Update to esmf version 8.2.1 when using GNU on Hera. 

    Fixes ufs-community#143.
    @GeorgeGayno-NOAA
    GeorgeGayno-NOAA committed May 31, 2022
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