Skip to content

Commit

Permalink
Update Progenio.md
Browse files Browse the repository at this point in the history
  • Loading branch information
Thys3Potgieter authored Dec 27, 2024
1 parent 54c20cd commit b6cfacc
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions Progenio.md
Original file line number Diff line number Diff line change
Expand Up @@ -10,7 +10,7 @@ Progenio is an open-source proteogenomics pipeline for multistrain genome annota
Ensure singularity is installed, and make sure at least 2 cores and 4 GB of RAM are available.

~~~
cd proteomics-pipelines/singularity/mqproteogenomics
cd proteomics-pipelines/singularity/progenio
./create_image.sh
~~~

Expand All @@ -30,7 +30,7 @@ Run the example:
~~~
cd cbio-proteogenomics-tests/lib/testdata/proteogenomics_sample
sixframe.sh genomes/ genomes/config.yaml # create the six frame database used by the next step (genomes/sixframe/combined_prot.fasta)
mqproteogenomics.sh mq_proteogeomics_test.yml # analyze the data using the six frame translated database
Progenio.sh progenio_test.yml # analyze the data using the six frame translated database
~~~

Now adjust the config file for our own data.
Expand Down

0 comments on commit b6cfacc

Please sign in to comment.