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UC Davis Bioinformatics Core

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  1. sickle sickle Public

    Forked from najoshi/sickle

    Windowed Adaptive Trimming for fastq files using quality

    C 25 8

  2. proc10xG proc10xG Public

    processing 10x genomics reads

    Python 23 12

  3. assemblathon2-analysis assemblathon2-analysis Public

    collection of scripts and commands used by Ian Korf, Keith Bradnam, and Joe Fass in the analysis of Assemblathon 2 entries (assemblies)

    Perl 21 21

  4. scRNA_shiny scRNA_shiny Public

    scRNA-seq Shiny App

    R 13 6

  5. scythe scythe Public

    Forked from vsbuffalo/scythe

    A 3'-end adapter contaminant trimmer

    C 11 5

  6. alignerviz alignerviz Public

    Forked from vsbuffalo/alignerviz

    A simple tool to visualize sequences using Vlachos et al's technique

    Python 8

Repositories

Showing 10 of 31 repositories
  • NeuroMabSeq Public

    A place to track issues for NeuroMabSeq project

    ucdavis-bioinformatics/NeuroMabSeq’s past year of commit activity
    Jupyter Notebook 2 1 5 0 Updated Aug 5, 2024
  • clonalvdjseq Public
    ucdavis-bioinformatics/clonalvdjseq’s past year of commit activity
    HTML 0 0 0 0 Updated May 20, 2024
  • scRNA_shiny Public

    scRNA-seq Shiny App

    ucdavis-bioinformatics/scRNA_shiny’s past year of commit activity
    R 13 Apache-2.0 6 1 0 Updated May 1, 2023
  • survey-pie-chart Public
    ucdavis-bioinformatics/survey-pie-chart’s past year of commit activity
    JavaScript 0 0 0 0 Updated Jul 26, 2022
  • scRNA-seq Public
    ucdavis-bioinformatics/scRNA-seq’s past year of commit activity
    0 0 0 0 Updated Jun 26, 2021
  • assemblathon2-analysis Public

    collection of scripts and commands used by Ian Korf, Keith Bradnam, and Joe Fass in the analysis of Assemblathon 2 entries (assemblies)

    ucdavis-bioinformatics/assemblathon2-analysis’s past year of commit activity
    Perl 21 21 2 2 Updated Mar 29, 2021
  • HTStream_reports Public

    R reports based on JSON HTStream ouptut

    ucdavis-bioinformatics/HTStream_reports’s past year of commit activity
    1 Apache-2.0 0 0 0 Updated May 4, 2020
  • module_counter Public
    ucdavis-bioinformatics/module_counter’s past year of commit activity
    Python 0 0 0 0 Updated Feb 29, 2020
  • django-ezreg Public Forked from amschaal/django-ezreg
    ucdavis-bioinformatics/django-ezreg’s past year of commit activity
    Python 0 3 0 0 Updated Jan 22, 2020
  • scRNAseq_Analysis_Workflow Public

    multipart analysis workflow in R for scRNAseq

    ucdavis-bioinformatics/scRNAseq_Analysis_Workflow’s past year of commit activity
    1 0 0 0 Updated Nov 1, 2019
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