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ci: update how we append to PATH in actions (#568)
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* ci: update how we append to PATH in actions

* ci: add perl to dependency install

* ci: check perl installation

* ci: check perl installation

* ci: fix path append

* ci: add ncurses

* ci: add tmate action

* ci: try different samtools version grab

* ci: try different samtools version grab

* ci: try different samtools version grab

* ci: try different samtools version grab

* ci: try different samtools version grab

* ci: remove tmp steps

* replace travis status badge with actions badge
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mbhall88 authored Oct 18, 2023
1 parent 87d05f7 commit e0ac8fc
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8 changes: 4 additions & 4 deletions .github/workflows/main.yml
Original file line number Diff line number Diff line change
Expand Up @@ -8,16 +8,16 @@ jobs:

steps:
- name: Checkout code
uses: actions/checkout@v2
uses: actions/checkout@v4

- name: Install Dependencies
run: |
sudo apt-get update
sudo apt-get install -y libstdc++6 liblzma5 libbz2-1.0 bioperl
sudo apt-get install -y libstdc++6 liblzma5 libbz2-1.0 bioperl libncursesw5
- name: Set PATH for binaries
- name: Add binaries to PATH
run: |
echo "$PWD/bin:$PWD/binaries/noarch:$PWD/binaries/linux:$PATH" >> $GITHUB_ENV
echo "$PWD/bin:$PWD/binaries/noarch:$PWD/binaries/linux" >> $GITHUB_PATH
- name: Check binaries
run: |
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2 changes: 1 addition & 1 deletion README.md
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@@ -1,4 +1,4 @@
[![Build Status](https://travis-ci.org/tseemann/snippy.svg?branch=master)](https://travis-ci.org/tseemann/snippy)
[![CI](https://github.com/tseemann/snippy/actions/workflows/main.yml/badge.svg)](https://github.com/tseemann/snippy/actions/workflows/main.yml)
[![License: GPL v2](https://img.shields.io/badge/License-GPL%20v2-blue.svg)](https://www.gnu.org/licenses/old-licenses/gpl-2.0.en.html)
![Don't judge me](https://img.shields.io/badge/Language-Perl_5-steelblue.svg)

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