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Update readme.
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trvrb committed Oct 19, 2013
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# Simulating virus evolution and epidemiology

## Introduction
# Introduction

Antigen implements an SIR epidemiological model where hosts in a population are infected with
viruses that have distinct antigenic phenotypes. Hosts make contacts trasmitting viruses and also
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deme occur through standard mass action, while contacts between demes occur at some fraction of the
rate of within deme contact.

![](figures/antigen.png)

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## Running
# Running

I haven't made a makefile. The program can be compiled with:

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