85 upgrade navigator with octree controls

build.gradle

@@ -2,10 +2,10 @@ plugins {
     id 'java'
     id 'idea'
     id 'application'
-    id 'com.github.ben-manes.versions' version '0.51.0'
+    id 'com.github.ben-manes.versions' version '0.52.0'
     id 'net.nemerosa.versioning' version '3.1.0'
     id 'org.openjfx.javafxplugin' version '0.1.0'
-    id 'org.gradlex.extra-java-module-info' version '1.9'
+    id 'org.gradlex.extra-java-module-info' version '1.10.1'
     id 'org.beryx.jlink' version '3.1.1'
 }
 
@@ -63,14 +63,15 @@ dependencies {
     implementation group: 'com.fasterxml.jackson.core', name: 'jackson-databind', version: '2.18.2'
     implementation group: 'com.github.sarxos', name: 'webcam-capture', version: '0.3.12'
     implementation group: 'org.jflac', name: 'jflac-codec', version: '1.5.2'
+    implementation group: 'com.tambapps.fft4j', name: 'fft4j', version: '2.0'
 
     // Enforce slf4j-api version across dependencies
     implementation group: 'org.slf4j', name: 'slf4j-api', version: '2.0.16'
-    implementation group: 'ch.qos.logback', name: 'logback-classic', version: '1.5.12'
+    implementation group: 'ch.qos.logback', name: 'logback-classic', version: '1.5.16'
 
-    testImplementation 'org.junit.jupiter:junit-jupiter:5.11.3'
-    testImplementation 'org.junit.platform:junit-platform-suite:1.11.3'
-    testRuntimeOnly 'org.junit.platform:junit-platform-launcher:1.11.3'
+    testImplementation 'org.junit.jupiter:junit-jupiter:5.11.4'
+    testImplementation 'org.junit.platform:junit-platform-suite:1.11.4'
+    testRuntimeOnly 'org.junit.platform:junit-platform-launcher:1.11.4'
 }
 
 // Make sure every single dependency is modularized.
@@ -126,6 +127,10 @@ extraJavaModuleInfo {
         requires('java.desktop')
         exportAllPackages()
     }
+    module('com.tambapps.fft4j:fft4j', 'fft4j') {
+        exportAllPackages()
+    }
+
 }
 
 // </editor-fold>
@@ -149,7 +154,7 @@ idea {
 }
 
 tasks.named('wrapper', Wrapper) {
-    gradleVersion = '8.11.1'
+    gradleVersion = '8.12.1'
     distributionType = Wrapper.DistributionType.BIN
 }
 

gradle.properties

@@ -8,4 +8,4 @@ org.gradle.java.installations.auto-detect=true
 
 # Project Build Properties
 env=dev
-javafx.version=21.0.5
+javafx.version=21.0.6

gradle/wrapper/gradle-wrapper.properties

@@ -1,6 +1,6 @@
 distributionBase=GRADLE_USER_HOME
 distributionPath=wrapper/dists
-distributionUrl=https\://services.gradle.org/distributions/gradle-8.11.1-bin.zip
+distributionUrl=https\://services.gradle.org/distributions/gradle-8.12.1-bin.zip
 networkTimeout=10000
 validateDistributionUrl=true
 zipStoreBase=GRADLE_USER_HOME

nbactions-4kMemory.xml

@@ -11,7 +11,7 @@
             </goals>
             <properties>
                 <exec.vmArgs>-Dprism.maxvram=2G</exec.vmArgs>
-                <exec.args>${exec.vmArgs} -classpath %classpath ${exec.mainClass} ${exec.appArgs}</exec.args>
+                <exec.args>${exec.vmArgs} -Xmx6g -classpath %classpath ${exec.mainClass} ${exec.appArgs}</exec.args>
                 <exec.mainClass>edu.jhuapl.trinity.TrinityMain</exec.mainClass>
                 <exec.executable>java</exec.executable>
             </properties>
@@ -26,8 +26,8 @@
                 <goal>org.codehaus.mojo:exec-maven-plugin:3.4.1:exec</goal>
             </goals>
             <properties>
-                <exec.vmArgs>-Dprism.maxvram=2G -Dprism.poolstats=true -agentlib:jdwp=transport=dt_socket,server=n,address=${jpda.address}</exec.vmArgs>
-                <exec.args>${exec.vmArgs} -classpath %classpath ${exec.mainClass} ${exec.appArgs}</exec.args>
+                <exec.vmArgs>-Dprism.maxvram=2G -agentlib:jdwp=transport=dt_socket,server=n,address=${jpda.address}</exec.vmArgs>
+                <exec.args>${exec.vmArgs} -Xmx6g -classpath %classpath ${exec.mainClass} ${exec.appArgs}</exec.args>
                 <exec.mainClass>edu.jhuapl.trinity.TrinityMain</exec.mainClass>
                 <exec.executable>java</exec.executable>
                 <jpda.listen>true</jpda.listen>
@@ -44,7 +44,7 @@
             </goals>
             <properties>
                 <exec.vmArgs>-Dprism.maxvram=2G</exec.vmArgs>
-                <exec.args>${exec.vmArgs} -classpath %classpath ${exec.mainClass} ${exec.appArgs}</exec.args>
+                <exec.args>${exec.vmArgs} -Xmx6g -classpath %classpath ${exec.mainClass} ${exec.appArgs}</exec.args>
                 <exec.mainClass>edu.jhuapl.trinity.TrinityMain</exec.mainClass>
                 <exec.executable>java</exec.executable>
                 <exec.appArgs>--outrun=true --matrix=true</exec.appArgs>

nbactions-VRAMDebug.xml

@@ -0,0 +1,53 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<actions>
+        <action>
+            <actionName>run</actionName>
+            <packagings>
+                <packaging>jar</packaging>
+            </packagings>
+            <goals>
+                <goal>process-classes</goal>
+                <goal>org.codehaus.mojo:exec-maven-plugin:3.4.1:exec</goal>
+            </goals>
+            <properties>
+                <exec.vmArgs>-Dprism.maxvram=2G</exec.vmArgs>
+                <exec.args>${exec.vmArgs} -Xmx6g -classpath %classpath ${exec.mainClass} ${exec.appArgs}</exec.args>
+                <exec.mainClass>edu.jhuapl.trinity.TrinityMain</exec.mainClass>
+                <exec.executable>java</exec.executable>
+            </properties>
+        </action>
+        <action>
+            <actionName>debug</actionName>
+            <packagings>
+                <packaging>jar</packaging>
+            </packagings>
+            <goals>
+                <goal>process-classes</goal>
+                <goal>org.codehaus.mojo:exec-maven-plugin:3.4.1:exec</goal>
+            </goals>
+            <properties>
+                <exec.vmArgs>-Dprism.maxvram=2G -Dprism.poolstats=true -agentlib:jdwp=transport=dt_socket,server=n,address=${jpda.address}</exec.vmArgs>
+                <exec.args>${exec.vmArgs} -Xmx6g -classpath %classpath ${exec.mainClass} ${exec.appArgs}</exec.args>
+                <exec.mainClass>edu.jhuapl.trinity.TrinityMain</exec.mainClass>
+                <exec.executable>java</exec.executable>
+                <jpda.listen>true</jpda.listen>
+            </properties>
+        </action>
+        <action>
+            <actionName>profile</actionName>
+            <packagings>
+                <packaging>jar</packaging>
+            </packagings>
+            <goals>
+                <goal>process-classes</goal>
+                <goal>org.codehaus.mojo:exec-maven-plugin:3.4.1:exec</goal>
+            </goals>
+            <properties>
+                <exec.vmArgs>-Dprism.maxvram=2G</exec.vmArgs>
+                <exec.args>${exec.vmArgs} -Xmx6g -classpath %classpath ${exec.mainClass} ${exec.appArgs}</exec.args>
+                <exec.mainClass>edu.jhuapl.trinity.TrinityMain</exec.mainClass>
+                <exec.executable>java</exec.executable>
+                <exec.appArgs>--outrun=true --matrix=true</exec.appArgs>
+            </properties>
+        </action>
+    </actions>

pom.xml

@@ -20,24 +20,24 @@
         <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
         <project.reporting.outputEncoding>UTF-8</project.reporting.outputEncoding>
         <java.version>21</java.version>
-        <javafx.version>21.0.5</javafx.version>
+        <javafx.version>21.0.6</javafx.version>
         <maven.min.version>3.6.3</maven.min.version>
         <maven.compiler.source>${java.version}</maven.compiler.source>
         <maven.compiler.target>${java.version}</maven.compiler.target>
         <maven.compiler.release>${java.version}</maven.compiler.release>
         <maven.build.timestamp.format>yyyy.MM.dd</maven.build.timestamp.format>
         <maven.compiler.plugin.version>3.13.0</maven.compiler.plugin.version>
         <maven.enforcer.plugin.version>3.5.0</maven.enforcer.plugin.version>
-        <maven.assembly.plugin.version>3.6.0</maven.assembly.plugin.version>
+        <maven.assembly.plugin.version>3.7.1</maven.assembly.plugin.version>
         <maven.surefire.plugin.version>3.5.2</maven.surefire.plugin.version>
         <maven.site.plugin.version>4.0.0-M16</maven.site.plugin.version>
         <javafx.maven.plugin.version>0.0.8</javafx.maven.plugin.version>
         <codehaus.flatten.plugin.version>1.6.0</codehaus.flatten.plugin.version>
         <codehaus.build.helper.maven.plugin.version>3.6.0</codehaus.build.helper.maven.plugin.version>
         <git.commit.maven.plugin.version>9.0.1</git.commit.maven.plugin.version>
-        <org.owasp.dependency-check-maven.plugin.version>10.0.4</org.owasp.dependency-check-maven.plugin.version>
-        <junit.jupiter.version>5.11.3</junit.jupiter.version>
-        <junit.jupiter.platform.version>1.11.3</junit.jupiter.platform.version>
+        <org.owasp.dependency-check-maven.plugin.version>12.0.2</org.owasp.dependency-check-maven.plugin.version>
+        <junit.jupiter.version>5.11.4</junit.jupiter.version>
+        <junit.jupiter.platform.version>1.11.4</junit.jupiter.platform.version>
         <litfx.controls.version>0.1.3</litfx.controls.version>
         <fxyz3d.version>0.6.0</fxyz3d.version>
         <hansolo.charts.version>21.0.21</hansolo.charts.version>
@@ -48,8 +48,9 @@
         <jackson.version>2.18.2</jackson.version>
         <sarxos.webcam.capture.version>0.3.12</sarxos.webcam.capture.version>
         <org.jflac.jflac-codec.version>1.5.2</org.jflac.jflac-codec.version>
+        <com.tambapps.fft4j.version>2.0</com.tambapps.fft4j.version>
         <slf4j.version>2.0.16</slf4j.version>
-        <logback.version>1.5.12</logback.version>
+        <logback.version>1.5.16</logback.version>
         <mainClassName>edu.jhuapl.trinity.TrinityMain</mainClassName>
         <!-- Values for build.properties -->
         <trinity.title>Trinity</trinity.title>
@@ -160,10 +161,16 @@
             <version>${sarxos.webcam.capture.version}</version>
         </dependency>
         <dependency>
-          <groupId>org.jflac</groupId>
-          <artifactId>jflac-codec</artifactId>
-          <version>${org.jflac.jflac-codec.version}</version>
+            <groupId>org.jflac</groupId>
+            <artifactId>jflac-codec</artifactId>
+            <version>${org.jflac.jflac-codec.version}</version>
         </dependency>
+        <dependency>
+            <groupId>com.tambapps.fft4j</groupId>
+            <artifactId>fft4j</artifactId>
+            <version>${com.tambapps.fft4j.version}</version>
+        </dependency>
+
         <!-- Enforce slf4j-api version across dependencies-->
         <dependency>
             <groupId>org.slf4j</groupId>

src/main/java/com/clust4j/log/Log.java

@@ -527,16 +527,16 @@ private static void setLog4jProperties(String logDirParent, Properties p) {
 //                        } else {
 //                            java.util.Properties p = new java.util.Properties();
 //                            setLog4jProperties(logDirParent, p);
-////				PropertyConfigurator.configure(p);
-////                            context.setConfiguration()
+
+    /// /				PropertyConfigurator.configure(p);
+    /// /                            context.setConfiguration()
 //                            //@TODO SMP
 //
 //                        }
 //		}
 //
 //		return _logger = LogManager.getLogger(Log.class.getName());
 //	}
-
     public static void setLogLevel(int log_level) throws IllegalArgumentException {
         Level l;