Tpetra: device version of sort_and_merge_crs #11751

lucbv · 2023-03-30T21:01:25Z

This should increase the speed of MueLu by a nice amount on GPU platforms : )

@trilinos/tpetra

Motivation

There is no reason to not perform the sort and merge of csr entries on device.
This code should increase the performance of Tpetra and MueLu on GPU architectures.

Related Issues

Closes Tpetra: improve performance of sortAndMergeCrsEntries #11696
Blocks
Is blocked by
Follows
Precedes
Related to Tpetra: improve performance of TAFC (Transfer and fillComplete) #11689
Part of
Composed of

Stakeholder Feedback

Testing

Tested on Crusher

trilinos-autotester · 2023-03-30T21:28:17Z

Status Flag 'Pre-Test Inspection' - Auto Inspected - Inspection Is Not Necessary for this Pull Request.

trilinos-autotester · 2023-03-30T21:30:01Z

Status Flag 'Pull Request AutoTester' - Testing Jenkins Projects:

Pull Request Auto Testing STARTING (click to expand)

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Using Repos:

Repo: TRILINOS (lucbv/Trilinos)

Pull Request Author: lucbv

packages/tpetra/core/src/Tpetra_Import_Util2.hpp

trilinos-autotester · 2023-03-30T23:05:40Z

Status Flag 'Pull Request AutoTester' - Jenkins Testing: 1 or more Jobs FAILED

Note: Testing will normally be attempted again in approx. 2 Hrs 30 Mins. If a change to the PR source branch occurs, the testing will be attempted again on next available autotester run.

Pull Request Auto Testing has FAILED (click to expand)

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CDash Test Results for PR# 11751.

Wiki: How to Reproduce PR Testing Builds and Errors.

jhux2 · 2023-03-30T23:10:07Z

Example test failure:

packages/tpetra/core/src/Tpetra_Import_Util2.hpp

brian-kelley · 2023-05-25T18:56:16Z

packages/tpetra/core/src/Tpetra_Import_Util2.hpp

@@ -712,6 +719,19 @@ sortAndMergeCrsEntries (const Teuchos::ArrayView<size_t> &CRS_rowptr,
  return sortAndMergeCrsEntries(CRS_rowptr, CRS_colind, CRS_vals);


Why sort and merge dummy values here? There is a sort_and_merge_graph which doesn't have values as input/output.

I am not quite sure, but this can be updated eventually, at this point it seems to be a host only view based function.
Not too sure who wanted it that way, we can make an issue about that and fix it after this PR gets merged.

trilinos-autotester · 2023-08-29T22:46:43Z

Status Flag 'Pull Request AutoTester' - User Requested Retest - Label AT: RETEST will be reset after testing.

trilinos-autotester · 2023-08-29T22:46:45Z

Status Flag 'Pre-Test Inspection' - Auto Inspected - Inspection is Not Necessary for this Pull Request.

trilinos-autotester · 2023-08-29T22:48:31Z

Status Flag 'Pull Request AutoTester' - Testing Jenkins Projects:

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TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`455b077`

Using Repos:

Repo: TRILINOS (lucbv/Trilinos)

Pull Request Author: lucbv

trilinos-autotester · 2023-08-29T23:57:24Z

Status Flag 'Pull Request AutoTester' - Jenkins Testing: 1 or more Jobs FAILED

Note: Testing will normally be attempted again in approx. 2 Hrs 30 Mins. If a change to the PR source branch occurs, the testing will be attempted again on next available autotester run.

Pull Request Auto Testing has FAILED (click to expand)

Build Information

Test Name: Trilinos_PR_gcc-8.3.0

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Status: FAILED

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CDash Test Results for PR# 11751.

Wiki: How to Reproduce PR Testing Builds and Errors.

jhux2 · 2023-08-30T00:20:22Z

@sebrowne No cdash results show up when I click the link above.

sebrowne · 2023-08-30T12:44:35Z

@sebrowne No cdash results show up when I click the link above.

Excellent catch, the new autotester is sending a link for testing.sandia.gov/cdash instead of trilinos-cdash.sandia.gov

Use this link: https://trilinos-cdash.sandia.gov/index.php?project=Trilinos&filtercombine=and&filtercombine=and&filtercombine=and&filtercombine=and&filtercombine=and&filtercombine=and&filtercount=2&showfilters=1&filtercombine=and&field1=buildname&compare1=63&value1=PR-11751-test&field2=buildstarttime&compare2=84&value2=NOW

I'll ask SEMS to fix that, must have missed that in the autotester configurations.

In transfer and fill complete, the sort of crs matrix data is currently done on host using ArrayRCP, we are moving this call to device and storing data in View. Data is subsequently copied and moved back to host and ArrayRCP while other routines are being moved on device as well until we can skip the use of ArrayRCP all together.

packages/tpetra/core/src/Tpetra_CrsMatrix_def.hpp

jhux2

lgtm

packages/tpetra/core/src/Tpetra_CrsMatrix_def.hpp

fixing typo in comment

jhux2

thanks!

trilinos-autotester · 2023-09-13T21:20:17Z

Status Flag 'Pull Request AutoTester' - User Requested Retest - Label AT: RETEST will be reset after testing.

trilinos-autotester · 2023-09-13T21:20:20Z

Status Flag 'Pre-Test Inspection' - Auto Inspected - Inspection is Not Necessary for this Pull Request.

trilinos-autotester · 2023-09-13T21:22:07Z

Status Flag 'Pull Request AutoTester' - Testing Jenkins Projects:

Pull Request Auto Testing STARTING (click to expand)

Build Information

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Using Repos:

Repo: TRILINOS (lucbv/Trilinos)

Pull Request Author: lucbv

trilinos-autotester · 2023-09-13T23:29:40Z

Status Flag 'Pull Request AutoTester' - User Requested Retest - Label AT: RETEST will be reset after testing.

trilinos-autotester · 2023-09-13T23:31:26Z

Status Flag 'Pull Request AutoTester' - Testing Jenkins Projects:

Pull Request Auto Testing STARTING (click to expand)

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Using Repos:

Repo: TRILINOS (lucbv/Trilinos)

Pull Request Author: lucbv

trilinos-autotester · 2023-09-14T03:04:57Z

Status Flag 'Pull Request AutoTester' - Jenkins Testing: all Jobs PASSED

Pull Request Auto Testing has PASSED (click to expand)

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CDash Test Results for PR# 11751.

trilinos-autotester · 2023-09-14T03:05:16Z

Status Flag 'Pre-Merge Inspection' - SUCCESS: The last commit to this Pull Request has been INSPECTED AND APPROVED by [ jhux2 ]!

trilinos-autotester · 2023-09-14T03:05:23Z

Status Flag 'Pull Request AutoTester' - Pull Request will be Automerged

trilinos-autotester · 2023-09-14T03:05:36Z

Merge on Pull Request# 11751: IS A SUCCESS - Pull Request successfully merged

After the refactor done in PR trilinos#11751, these new changes remove the copy to host after sorting the CRS matrix and instead just call the setAllValues overload that accepts Kokkos Views. Should improve performance a bit and this provides a step toward completing issue trilinos#11689.

lucbv added pkg: Tpetra AT: AUTOMERGE Causes the PR autotester to automatically merge the PR branch once approvals are completed client: ExaWind All issue that impact the ECP project ExaWind labels Mar 30, 2023

lucbv requested review from brian-kelley and jhux2 March 30, 2023 21:01

lucbv self-assigned this Mar 30, 2023

brian-kelley reviewed Mar 30, 2023

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lucbv added AT: WIP Causes the PR autotester to not test the PR. (Remove to allow testing to occur.) and removed AT: AUTOMERGE Causes the PR autotester to automatically merge the PR branch once approvals are completed labels Apr 12, 2023

lucbv force-pushed the tpetra_TAFC_sort_on_device branch from 44f4301 to 6a77a08 Compare May 24, 2023 23:29

jhux2 requested changes May 25, 2023

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lucbv force-pushed the tpetra_TAFC_sort_on_device branch from 6a77a08 to b2a78ae Compare August 17, 2023 17:42

jhux2 added AT: RETEST Causes the PR autotester to run a new round of PR tests on the next iteration and removed AT: WIP Causes the PR autotester to not test the PR. (Remove to allow testing to occur.) labels Aug 29, 2023

trilinos-autotester removed the AT: RETEST Causes the PR autotester to run a new round of PR tests on the next iteration label Aug 29, 2023

jhux2 added the AT: WIP Causes the PR autotester to not test the PR. (Remove to allow testing to occur.) label Aug 30, 2023

lucbv added AT: RETEST Causes the PR autotester to run a new round of PR tests on the next iteration and removed AT: WIP Causes the PR autotester to not test the PR. (Remove to allow testing to occur.) labels Sep 11, 2023

lucbv force-pushed the tpetra_TAFC_sort_on_device branch from b4e1645 to c6d5791 Compare September 12, 2023 01:28

brian-kelley previously approved these changes Sep 13, 2023

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lucbv dismissed brian-kelley’s stale review via ef26e3a September 13, 2023 17:02

lucbv added AT: RETEST Causes the PR autotester to run a new round of PR tests on the next iteration and removed AT: WIP Causes the PR autotester to not test the PR. (Remove to allow testing to occur.) labels Sep 13, 2023

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Update Tpetra_CrsMatrix_def.hpp

7258f3c

fixing typo in comment

lucbv dismissed stale reviews from brian-kelley and jhux2 via 7258f3c September 13, 2023 19:14

jhux2 approved these changes Sep 13, 2023

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lucbv added the AT: AUTOMERGE Causes the PR autotester to automatically merge the PR branch once approvals are completed label Sep 13, 2023

trilinos-autotester removed the AT: RETEST Causes the PR autotester to run a new round of PR tests on the next iteration label Sep 14, 2023

trilinos-autotester merged commit d545e58 into trilinos:develop Sep 14, 2023

trilinos-autotester removed the AT: AUTOMERGE Causes the PR autotester to automatically merge the PR branch once approvals are completed label Sep 14, 2023

lucbv deleted the tpetra_TAFC_sort_on_device branch September 14, 2023 14:10

This was referenced Sep 14, 2023

Tpetra: improve performance of sortAndMergeCrsEntries #11696

Closed

Tpetra: remove unnecessary copy to host in TAFC #12262

Merged

		@@ -712,6 +719,19 @@ sortAndMergeCrsEntries (const Teuchos::ArrayView<size_t> &CRS_rowptr,
		return sortAndMergeCrsEntries(CRS_rowptr, CRS_colind, CRS_vals);

Tpetra: device version of sort_and_merge_crs #11751

Tpetra: device version of sort_and_merge_crs #11751

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lucbv commented Mar 30, 2023

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trilinos-autotester commented Mar 30, 2023

trilinos-autotester commented Mar 30, 2023

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trilinos-autotester commented Mar 30, 2023

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jhux2 commented Mar 30, 2023

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trilinos-autotester commented Aug 29, 2023

trilinos-autotester commented Aug 29, 2023

trilinos-autotester commented Aug 29, 2023

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