Uniform Manifold Approximation and Projection
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Nov 29, 2024 - Python
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umap
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Visualization for a Retrieval-Augmented Generation (RAG) Assistant 🤖❤️📚
visualization machine-learning openai umap rag huggingface streamlit large-language-models llm retrieval-augmented langchain retrieval-augmented-generation
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Dec 17, 2024 - Python
Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.
bioinformatics big-data genomics clustering scrna-seq graph-analytics memory-efficient tsne differential-expression umap dimension-reduction single-cell-genomics single-cell-rna-seq scalable-data-analysis single-cell-atac-seq multiomics cite-seq pseudotime scatac-seq gene-modules
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Jan 20, 2025 - Python
create "Karpathy's style" 2d images out of your image embeddings
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Dec 27, 2022 - Python
Using machine learning on your anki collection to enhance the scheduling via semantic clustering and semantic similarity
nlp ai flashcards clustering scheduler pca machinelearning kmeans anki embedding doc2vec bert umap latent sentence-embeddings neighbourhood sbert sementics
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Oct 5, 2024 - Python
A fast, accurate, and modularized dimensionality reduction approach based on diffusion harmonics and graph layouts. Escalates to millions of samples on a personal laptop. Adds high-dimensional big data intrinsic structure to your clustering and data visualization workflow.
visualization machine-learning dimensionality-reduction nearest-neighbors single-cell graph-layout umap diffusion-process denoising high-dimensional
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Apr 4, 2021 - Python
A general purpose Snakemake workflow and MrBiomics module to perform unsupervised analyses (dimensionality reduction & cluster analysis) and visualizations of high-dimensional data.
visualization workflow data-science snakemake clustering heatmap data-visualization high-dimensional-data pca dimensionality-reduction unsupervised-learning cluster-analysis principal-component-analysis clustering-algorithm umap cluster-validation leiden-algorithm densmap clustree
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Dec 20, 2024 - Python
Estimate dataset difficulty and detect label mistakes using reconstruction error ratios!
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Jan 10, 2025 - Python
represent each cell in UMAP plots as a pie chart
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Sep 27, 2021 - Python
Using word embeddings, TFIDF and text-hashing to cluster and visualise text documents
clustering dimensionality-reduction text-processing d3js document-clustering umap computational-social-science text-clustering text-features
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Nov 7, 2019 - Python
1000 Genomes Project population visualizations using dimensionality reduction
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Dec 8, 2022 - Python
pytorch implementation of Deep Supervised Hashing
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Feb 15, 2023 - Python
flameplot is a python package for the quantification of local similarity across two maps or embeddings.
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Feb 21, 2023 - Python
Pipeline for analysing and visualising CyTOF datasets, with a focus on PTM signalling networks.
visualization visualisation pca data-analysis ptm fcs umap mass emd cytof cytometry signalling cytobank ptms organoids cell-communication-lab scprep dremi tape-lab
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Dec 7, 2023 - Python
Making word clouds more interesting
d3 nlp data-science word-embeddings data-visualization word-cloud nltk d3js nlp-machine-learning umap word-clouds hdbscan word-embedding pke nltk-python
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Jan 22, 2019 - Python
[ECML-PKDD 2021] Invertible Manifold Learning for Dimension Reduction
visualization deep-learning pytorch mnist autoencoder tsne manifold-learning umap dimension-reduction invertible-models
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Jan 15, 2023 - Python
Augmenting the Interpretability of GraphCodeBERT for Code Similarity Tasks
code code-analysis pca-analysis semantic-similarity similarity-measures umap interpretability code-similarity clone-detection codebert graphcodebert
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Jan 15, 2025 - Python
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