R package for "Multi-tissue Transcriptome-Wide Association Studies (MTWAS)"

Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)

Summary-level Unified Method for Modeling Integrated Transcriptome

Analysis of transcriptome imputation using paired genotype-expression data from SAGE and GEUVADIS

Optimizing transcriptome prediction models for use in multi-ethnic TWAS using multivariate adaptive shrinkage.

LocusXcanR: an R package that creates an R Shiny application that aids TWAS interpretation, can be extended to other ‘omics data, and highlights R Shiny’s effectiveness at presenting results in an approachable, interactive, and visual format.

Factored QTL analysis applied to GTEx and GWAS of 114 complex traits