A streamlined pipeline for germline variant calling on chromosome 11 using GATK. This repository includes workflows for data preprocessing, variant discovery, and annotation, with a focus on understanding genetic variations linked to disease-associated genes.
bioinformatics snps vcf gatk variant-calling bam population-genetics samtools bwa genome-analysis indels bcftools variant-annotation reference-genome exome-sequencing 1000genomes snpeff haplotypecaller human-genome gatk4-haplotypecaller
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Updated
Nov 26, 2024 - R