memote – the genome-scale metabolic model test suite
-
Updated
Jan 8, 2024 - HTML
#
SBML
SBML (the Systems Biology Markup Language) is an XML-based format for communicating and storing representations of biological processes. Its aim is to be a lingua franca for representing models in biology. SBML is suitable for models commonly found in research on a number of topics, including cell signaling pathways, metabolic pathways, biochemical reactions, gene regulation, and many others.
Here are 12 public repositories matching this topic...
The Systems Biology Simulation Core Library (SBSCL) provides an efficient and exhaustive Java implementation of methods to interpret the content of models encoded in the Systems Biology Markup Language (SBML) and its numerical solution.
java api library simulation solver linear-programming simulations ordinary-differential-equations numerical-simulations ode-solver steady-state sbml flux-balance-analysis time-series-analysis constraint-based-modeling fba sbml-model systems-biology-simulation
-
Updated
Apr 6, 2025 - HTML
The source code and issue tracker for the SBML.org website.
-
Updated
Apr 3, 2025 - HTML
XitoSBML - the spatial SBML plugin for ImageJ
-
Updated
Nov 17, 2021 - HTML
LibSBMLSim: A library for simulating SBML models (Version 2)
-
Updated
Jan 24, 2020 - HTML
Context-sensitive creation of kinetic equations in biochemical networks
reaction plug equation systems-biology computational-biology information-extraction reactions mathematical-modelling sbml regulatory-network biological-networks metabolic-engineering sbo andreas-zell andreas-dr-ger biochemical-networks kinetic-equations bmc-systems-biology celldesigner
-
Updated
Mar 16, 2021 - HTML
Physiologically based pharmacokinetics (PBPK) model of tirzapetide
-
Updated
Mar 6, 2025 - HTML