📋 A Python Parser for PubMed Open-Access XML Subset and MEDLINE XML Dataset

NLP framework in python for entity recognition and relationship extraction

Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on top of Entrez E-utilities API.

A framework for keeping biomedical text mining result up-to-date

Open Access PDF harvester

A tool for harvesting media files from Open Access articles for upload into Wikimedia Commons

Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!

MediaWiki bot to upload content to Wikimedia projects and update corresponding citations on Wikipedia.

ScrapeMed: Data scraping for PubMed Central.

A library that facilitates the process of building a machine learning pipeline using PubMed as a data source

This script reads the exported (.csv|.txt) files from Scopus, Web of Science, PubMed, PubMed Central, Dimensions or Google Scholar exported from Publish or Perish databases and turns each of them into a new file with an unique format. This script will ignore duplicated records.

This script eliminates the duplicated records from formatted .xlsx files from Scopus, Web of Science, PubMed, PubMed Central, Dimensions or Google Scholar exported from Publish or Perish. Is mandatory that there be at least 2 different files from 2 different databases.

This script reads the exported (.csv|.txt) files from Scopus, Web of Science, PubMed, PubMed Central, Dimensions or Google Scholar exported from Publish or Perish databases and turns each of them into a new file with an unique format. This script will ignore duplicated records.

PyMedX is a Python library that provides access to PubMed.

This script eliminates the duplicated records from formatted .xlsx files from Scopus, Web of Science, PubMed, PubMed Central, Dimensions or Google Scholar exported from Publish or Perish. Is mandatory that there be at least 2 different files from 2 different databases.

A Python tool for systematic review scraping PubMed articles based on specified search queries.

Provides link of the full-text article upon giving PubMed's PMID