myVCF: a web-based platform for target and exome mutations data management
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Updated
Apr 13, 2021 - Python
myVCF: a web-based platform for target and exome mutations data management
BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.
Method to optimally select samples for validation and resequencing
Fast in-silico normalization algorithm for NGS data
Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ratio calculations
WOLAND is a multiplatform tool to analyze point mutation patterns using resequencing data from any organism or cell. It is implemented as a Perl and R tool using as inputs filtered unannotated or annotated SNV lists, combined with its correspondent genome sequences.
SRSF shape analysis framework for sequencing data
Tools for analyzing NGS sequence data and aligned protein sequences
Polymorphic Edge Detection - An efficient polymorphism detector for NGS data
ALAPY COMPRESSOR: FASTQ lossless compressor
useful bash one-liners and scripts
Extract unmapped read fragments from a sequence alignment map by evaluating it's concise idiosyncratic gapped alignment reports (CIGARs)
Miscellaneous tools for the analysis of NGS data
A tool to extract mappable reads from various library preparation protocols.
(Archived) This page is a record of my first formal NGS Project for Dr. Matesic of University of South Carolina (USC).
pyAmpli: an amplicon-based variant filter pipeline for targeted enriched resequencing data
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