Qiita - A multi-omics databasing effort

topological data analysis of population-scale microbiomes

Analyses in R and Python Using curatedMetagenomicData

A Collection of Bioinformatics Projects

Tools for phylogenetic data analysis including visualization and cluster-computing support.

A reference-free statistical approach to diversity-generating & mobile genetic element discovery

process raw reads from ubiome

Automated retrieval of consistent geographical metadata for microbiome research!

Code to reproduce preprocessing analysis of IBD dataset from the Human Microbiome Project. This work will provide a walk through analysis tool for the scientific community with less technical knowledge on data science and machine learning.

A database for storing and analyzing omics data

MAPle provides three different modules for the analysis of paired-end short read metagenomic data

Microbiome Data Analysis

A python package to calculate the dysbiosis score in microbiome datasets

This repository provides the scripts used to analyze the metagenomics data from the paper Nicotinamide Riboside-Conditioned Microbiota Deflects High-Fat Diet-Induced Weight Gain in Mice.

Python utility to generate distance matrices, perform PCoAs and generate taxonomic summaries using simple tab-separated feature tables.

A python implementation of the decontam R package for ASV filtering.

Predictive model, utilizes several machine learning algorithms to predict patient disease status from abundance data

Tools for phylogenetic data analysis including visualization and cluster-computing support.

genome annotation analyzer for the microbiome analysis