PhyML -- Phylogenetic estimation using (Maximum) Likelihood
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Updated
Apr 2, 2025 - C
PhyML -- Phylogenetic estimation using (Maximum) Likelihood
NumCosmo main code
Equilibrium Expectation for ERGM parameter estimation for large networks
A multi-algorithmic framework for phylogenetic inference
Python implementation of the research paper with the same title published in the PLOS Computational Biology journal. Link to the paper: https://doi.org/10.1371/journal.pcbi.0020006
Generate NCD-similarity matrices and perform minimum quartet tree cost clustering
This is a Github repo for the paper[https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4314427/] and its non-parametric Bayesian version (unpublished dissertation) by Dr. Xuyang Lu.
MPI-parallel implementation of the Multigrid Monte Carlo method based on PETSc
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