A module with convenience functions for writing Python code that interacts with OMERO.

A dataset for loading zarr files to be used in machine learning training pipelines

Medulla RMM is a radically simple IT automation and lifecycle management tool that offers the ability to handle repetitive tasks, quickly deploy applications, operating system and proactively manage them all where ever they are.

A relabeling tool for tiled segmentation with Dask

A module and scripts for working with OMERO

A deep learning model for histological image compression and decompression

Saving napari ROIs into OMERO

U-Net model for glomeruli segmentation in Whole Slide Images

Container for preprocessing slides using HistoQC

Repo for generating OMERO reports/dashboards

ROMI library controlling the PlantImager (hardware) or the VirtualPlantImager (Blender) to acquire images of (virtual) single potted plants.

Can Globus do delivery? Let's find out!

an example script to create MapAnnotations for wells in a plate based on a csv file

Code for deploying a dashboard for OMERO using flask and plotly

Convolutional Autoencoder (CAE) codec for image compression and storing in NGFF (Zarr) format.

Script for generating annotation keys for KOMP images in OMERO

An algorithm to sub-divide polygons that self-overlap

Automatically generating bounding boxes for OMERO slidescans

Simultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.