Convert Stockholm alignments as output by HMMER to cigar strings

Snakemake pipeline for searching genomic sequences for those that encode proteins containing domains of choice

Predicts subplastid localization of proteins along with sequence origin (plastid- or nuclear-encoded).

Sets of protein familes represented as profile HMMs annotated for antibiotic resistance and virulence function.

Find NLR hmms in protein sequences.

HMMER-based microcin search using full microcin sequences and double-glycine signal region.

basic visualization of hmm profile matches to multiple fasta files

MetAnnotate is a tool and web application for taxonomic profiling of shotgun metagenomes.

Create HMMs from KEGG orthologs

This repository contains the code used for screening putative extracellular Contractile Injection System (eCIS) loci from genomic sequences.

A workflow for identifying novel viruses in Virtool

An ML-based predictor of GPCR/G-protein couplings using only sequence information

A lightweight rewrite of run_dbcan for better multithread performance

Bioinformatics analysis code

A Galaxy based system for identifying retrotransposons in genome

A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.

Query sequence database by HMMs arranged in predefined synteny structure

MFannot is a program for the annotation of mitochondrial and plastid genomes