gaiaAssociation is a tool to detect the cell specific enrichment of loci in regulatory regions through the sum of non-identical binomials
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Updated
Sep 12, 2024 - Python
gaiaAssociation is a tool to detect the cell specific enrichment of loci in regulatory regions through the sum of non-identical binomials
Multi-trait fine-mapping for any number of uncorrelated traits (and limited number of correlated traits)
MendelianRandomization is an R package for assessing causal relationships using genetic variants as instrumental variables
Code and simulations using interaction-LD score regression
The multivariate MArginal ePIstasis Test
Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)
kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
Higher-order genetic interaction discovery with network-based biological priors.
MGflashfm: joint fine-mapping of genetic association signals in several traits amongst multiple population groups.
A Python package for creating high-quality manhattan and Q-Q plots from GWAS results.
A Bayesian grouped mixture of regressions model capable of estimating SNP marker effect sizes for multiple outcomes simultaneously
Scripts of Final Master Project
multiple imputation for association studies
tips and tricks in genome-wide association studies - a tutorial
R package to perform data pre-processing for more informative bacterial GWAS
A Javascript/d3 embeddable plugin for interactively visualizing statistical genetic data from customizable sources.
MultiGWAS tool for Genome-Wide Association Studies (GWAS) in plants (diploide and tetraploide)
Make interactive LocusZoom plots from a local GWAS file
A web service to upload and share GWAS results with LocusZoom.js
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