FSA (Fisheries Stock Assessment) package provides R functions to conduct typical introductory fisheries analyses.
-
Updated
Aug 26, 2023 - R
FSA (Fisheries Stock Assessment) package provides R functions to conduct typical introductory fisheries analyses.
Multi-species size-based ecological modelling in R
Stochastic surplus Production model in Continuous Time
A bundle of analytics tools for fisheries scientists
This package helps fisheries scientists collect growth data from calcified structures and back-calculate estimated lengths at previous ages. The package is intended to replace much of the functionality provided by the now out-dated fishBC software.
Expanding ocean food production under climate change
Slick Decision Analysis
Catch, Length, and Specimen Data Import Program Instructions for at sea survey data for AFSC's Gulf of Alaska and Bering Sea groundfish surveys.
A package for simulating marine mammal abundance and calculating reference points.
Bayesian Yield-Per-Recruit Model in Stan
Computer code to accompany "An Introduction to Bayesian Modeling and Inference for Fisheries Scientists
BENTHIS WP2 Workflow revisited. Split in several parts: i) obtain a gridded swept area from interpolating bottom contacting gears tracks, and ii) obtain spatial origin of catches (landings) by dispatching landings back to interpolated VMS positions, iii) compute fuel use from VMS-derived or AIS-derived effort data and fuel use models, iv) score …
This repository contains R code for my analysis of the genetic connectivity of Lane Snapper (Lutjanus synagris) across the Gulf of Mexico, the southeastern U.S. coast, and Belize. It includes data filtering, population structure analysis, Hardy-Weinberg equilibrium testing, and gene flow estimation, essential for fisheries management.
Data and code used in "Transient demographic dynamics of recovering fish populations shaped by past climate variability, harvest, and management"
A Management Strategy Evaluation (MSE) framework using FLBEIA and Gadget
R code for the Shiny interface for the Kuskokwim River Chinook salmon In-season Bayesian Risk Assessment Tool (i.e., "the P* Model")
This repository contains R code and data for the Management Strategy Evaluation (MSE) analysis of Lane Snapper. It examines the impact of updates to the DLM Toolkit, revised growth estimates on quota setting, and the adjustment of size limits. Includes simulations, performance metrics, and comparisons of operating models.
Fisheries Management Assessment Tool
A management strategy evaluation (MSE) framework for persistent estimation bias in stock assessment
Add a description, image, and links to the fisheries-management topic page so that developers can more easily learn about it.
To associate your repository with the fisheries-management topic, visit your repo's landing page and select "manage topics."