R package for pre-processing of mass and flow cytometry data

R package for analysis of single-cell data using graphs

R package for interactive visualization and analysis of single-cell data

R package to cluster single-cell data and generate features that can be used for model building

Fast auto-cleanup of CyTOF data

PICAFlow: a complete R workflow dedicated to flow/mass cytometry data, from data pre-processing to deep and comprehensive analysis.

Plots log histograms of FCS files like CyTOF's PlotViewer program

R Script for reading CyTOF or flow cytometry data (FCS) and generating plots like Cytobank

R script for summarising paramater / channel intensity from flow or mass cytometry data

Plots the MDS (Multi-dimensional scaling) of 3 or more FCS files.

R Script to plot the average event rate in flow or mass cytometry (FCS) files

Very fast method to read number of events from some / all FCS files in a directory

Opens two or more FCS files and creates new files that contain only the Channels common to all.

Plots the NRS (non-redundancy score) of selected markers from one or more FCS files

batch-titration is a container that allows for one or more fcs files to be automatically processed (using AWS Batch or other runners). It produces an html document.