LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.

Experimental design framework for scRNAseq population studies (eQTL and DE)

Older repo for MRLocus. See new website for software usage guide:

NPDR: Nearest-neighbor Projected-Distance Regression with the generalized linear model

R package for "Multi-tissue Transcriptome-Wide Association Studies (MTWAS)"

Computationally efficient and statistically powerful software for detecting context-specific eQTL effects in multi-context genomic studies.

Whole bone eQTL and GWAS enrichment analysis

An R interface to the GTEx Portal API

Hidden Markov Random Field Model - Inferring Gene-Disease Association by an Integrative Analysis of eQTL GWAS and Protein-Protein Interaction data

Scripts of Final Master Project

R/lineup package to detect sample mix-ups between two sets of measurements

analysis for UCSF BMI 206 based on Hormozdiari et al (2016) Am J Hum Genet

An R package for multivariate adaptive shrinkage.

Code and raw data used in the analyses for: Trans-acting genetic variation affects the expression of adjacent genes via horizontal mechanisms.

COMP483 - Computational Biology final project at Loyola University Chicago