An ensemble of plasmid classification tools
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Updated
Mar 28, 2023 - Shell
An ensemble of plasmid classification tools
This is a pipeline that can be used to generate a phylogenetic tree, including a heatmap showing carriage of specific genes, the assigned phylogroup of each strain, and the names of each strain. It should now be capable of working with any sort of strains - currently I'm working on making small improvements.
Bash scripts to run virulencefinder and serotypefinder in local settings on ecoli fasta and fastq.gz files.
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