An official implementation of PCRLv2 (pre-training and fine-tuning code are included).
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Updated
Sep 28, 2023 - Python
An official implementation of PCRLv2 (pre-training and fine-tuning code are included).
End-to-end Python CT volume preprocessing pipeline to convert raw DICOMs into clean 3D numpy arrays for ML. From paper Draelos et al. "Machine-Learning-Based Multiple Abnormality Prediction with Large-Scale Chest Computed Tomography Volumes."
Machine learning models for multi-organ, multi-disease prediction in chest CT volumes. From paper Draelos et al. "Machine-Learning-Based Multiple Abnormality Prediction with Large-Scale Chest Computed Tomography Volumes."
Segmentation and Classification models for COVID CT scans (COVID, pneumonia, normal) based on Mask R-CNN.
A simple privacy-focused web panel in flask for labeling CT Scan's slices
CNN's for bone segmentation of CT-scans.
A COVID-19 CT Scan Dataset Applicable in Machine Learning and Deep Learning
Deep CNN for performing 3D super resolution on CT/MRI scans
Idiopathic pulmonary fibrosis (IPF) is a restrictive interstitial lung disease that causes lung function decline by lung tissue scarring. Although lung function decline is assessed by the forced vital capacity (FVC), determining the accurate progression of IPF remains a challenge. To address this challenge, we proposed Fibro-CoSANet, a novel end…
View volumetric (3D) medical images in Jupyter notebooks
U-Net for biomedical image segmentation
Reconstruction of medical image data using DICOM format input data
In-depth motion analysis of mobile lung cancer tumors. Designed for 4D-CT scans of the thorax and provide valuable information for proton therapy treatment planning
A repository containing deep learning models and evaluation methods for enhancing medical image segmentation in Computed Tomography (CT) scans, with a focus on U-Net variants, nnUNet, and Swin-UNet architectures.
Workflow-centred open-source fully automated lung volumetry in chest CT.
A python class compatible with TensorFlow to perform data augmentation on 3D objects during CNN training.
LUng CAncer Screeningwith Multimodal Biomarkers
A GUI tool for visualizing 3D CT scans with ground truth and predicted segmentation overlays. The viewer allows for easy navigation through slices and adjustment of CT scan intensities. Perfect for medical image analysis and comparison of segmentation results.
COVID-19 Classification from 3D CT Images
Image-to-image deep learning framework for MRI to porosity map translation
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