A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics

metaUSAT is a data-adaptive statistical approach for testing genetic associations of multiple traits from single/multiple studies using univariate GWAS summary statistics.

mvtests: a suite of functions for testing genetic associations of multiple traits (a.k.a. cross-phenotype associations)

USAT uses a data-adaptive weighted score-based test statistic for testing association of multiple continuous phenotypes with a single genetic marker.

POM-PS tests for genetic associations of secondary traits from case-control GWAS.