A dynamic connectome mapping module in python.
Python library for analysis of neuroanatomical data.
STAGIN: Spatio-Temporal Attention Graph Isomorphism Network
A performant, powerful query framework to search for network motifs
Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation
GNN with summarization/grouping layer for speed and interpretability
Tools to work with the FlyWire connectome. Fully interoperable with navis.
An Explainable Geometric-Weighted Graph Attention Network (xGW-GAT) for Identifying Functional Networks Associated with Gait Impairment
ABMT (Adversarial Brain Multiplex Translator) for brain graph translation using geometric generative adversarial network (gGAN).
Meta-learning using graph neural networks for brain connectivity regression.
Supplemental source code for Nern et al. 2025: "Connectome-driven neural inventory of a complete visual system" (https://doi.org/10.1038/s41586-025-08746-0). The Cell type explorer repository is at https://github.com/reiserlab/male-drosophila-visual-system-connectome
Methods for estimating time-varying functional connectivity (TVFC)
A paper investigating bilateral symmetry of connectome networks.
Code base for our paper "Connectivity-Inspired Network for Context-Aware Recognition" (ECCV 2024, Human-inspired Computer Vision workshop)
maintainance of the code for complex network analysis based modeling of Event Related Potential (ERP) electroencephalography (EEG) data from baby brain, can be applied to other data, including human brain.
Python tool for spatially normalizing diffusion MRI data
A (soon to be) lightweight Python package for accessing single-cell connectome networks with metadata.
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