sriram-lab / egem Star 4 Code Issues Pull requests epigenome scale metabolic modeling for cancer metabolism metabolic-models metabolic-reconstruction epigenomics cancer-metabolism genome-scale-modeling histone-ptms histone-acetylation drug-sensitivity Updated Apr 16, 2022 MATLAB
sriram-lab / MetOncoFit Star 1 Code Issues Pull requests Common biochemical and topological attributes of metabolic genes recurrently dysregulated in tumors. machine-learning random-forest cancer-research metabolic-models metabolic-network genome-scale-models cancer-metabolism metabolic-attributes tumors tumor-models topological-attributes Updated Sep 30, 2022 HTML
ScottCampit / MetOncoFit Star 0 Code Issues Pull requests Common biochemical and topological attributes of metabolic genes recurrently dysregulated in tumors. python data-science data machine-learning random-forest scikit-learn data-visualization statistical-analysis flux-balance-analysis publication-code cancer-metabolism Updated Jan 5, 2023 HTML
ScottCampit / met-ptm-drug-cancer Star 0 Code Issues Pull requests Machine learning to learn metabolite-histone-drug interactions in cancer. machine-learning tensorflow systems-biology statistical-analysis drug-discovery network-analysis emt multi-omics cancer-metabolism Updated Jan 5, 2023 Jupyter Notebook
ScottCampit / emt-cobra Star 0 Code Issues Pull requests Modeling the metabolic changes during the epithelial-to-mesenchymal transition. matlab systems-biology statistical-analysis proteomics crispr transcriptomics emt cobra rprogramming flux-balance-analysis single-cell-analysis cancer-metabolism multi-omic-integration Updated Feb 1, 2025 HTML