Rapid population clustering with autoencoders

Combining phylogenetic networks and Random Forests for prediction of ancestry from multilocus genotype data

Diablo G25 - is a tool for conversion of VCF file to 23AndMe format and calculation of admixture scores from it.

A genealogy-based method to estimate the GRM within one ancestry in admixed populations

Python script to generate .snp and .ind Eigenstrat files from a PHYLIP infile

A Snakemake powered pipeline developed to perform population structure and admixture analysis given multiple Variant Call Format datasets. This has been developed in partial fulfilment of a MSc in Bioinformatics at the University of Pretoria by Graeme Ford.

Python script to add population identifiers to STRUCTURE, PLINK, and PHYLIP files

Ancestry Calculator for WeGene, It features population admixture model and MLE (Maximum Likelihood Estimation) algorithm to estimate admixture.

STRUCTURE and ROLLOFF reimplementations for CS 4775 (Computational Genetics and Genomics)

Create admixture model files (*.F, *.alleles) based on WBBC project of Westlake University.