Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer
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Updated
Apr 20, 2021 - R
Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer
Non-official Git repository for R package cellrangerRkit (currently not available elsewhere; I'm not affiliated with 10x)
R package: {rfca} Random forest-based cell annotation methods for scRNAseq analysis. {rfca} contains methods which identifies cell types using machine learning trained on a diversity of cell types, without the need for a labelled training dataset. It also allows you to train your own cell prediction models with your own labels (cell type, subtyp…
R script built on Seurat objects to analyze 10X single-cell expression data
Scripts developed to work with 10x Genomics sequencing results
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