Allow for missing ('.') values for GQ genotype subfield

tomkurowski · Feb 16, 2024 · 4542d1c · 4542d1c
1 parent 2ecd506
commit 4542d1c
Showing 1 changed file with 0 additions and 2 deletions.
diff --git a/src/variantsite.py b/src/variantsite.py
@@ -75,8 +75,6 @@ def _parse_genotype_field(self, call: str, genotype_format: List[str]):
             field: value
             for field, value in zip(genotype_format, call.split(':'))
         }
-        if 'GQ' in parsed_call:
-            parsed_call['GQ'] = int(parsed_call['GQ'])
         return parsed_call
 
     def _parse_info(self, info: str):