Skip to content

tischi/segmentation-annotator

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 
 
 
 
 
 
 
 
 
 
 
 
 

Repository files navigation

Segmentation annotator

Segmentation Annotator is a Fiji plugin for the inspection and annotation of segmented images.

Social media

Demonstration movies

Explore

Annotate

Render Objects in 3D

Install

  1. Please install Fiji onto your computer.
  2. Start Fiji and add the Update Site SegmentationAnnotator like this:
    • [ Help > Update.. ]
    • [ Manage update sites ]
      • SegmentationAnnotator
    • [ Close ]
  3. Restart Fiji

Quick start

After installation (see above). You can run below ImageJ macros to launch the application:

Run

After installation the following entries are available in the ImageJ menu:

  • [ Plugins > Segmentation > Annotator > Open Dataset from Table... ]
    • Experimental (Do not use yet).
  • [ Plugins > Segmentation > Annotator > Open Intensity and Label Mask Image... ]
    • Allows you to select an intensity image and label mask image from the currently open images.
    • It will automatically compute few basic features of the segmented objects.
  • [ Plugins > Segmentation > Annotator > Open Intensity and Label Mask Image and MorpholibJ Results Table... ]
    • As the command above but you can in addition select an object measurements table generated with MorpholibJ.

Use

  • Mouse: Right click: Shows a context menu through with most functionality can be accessed.
  • Mouse: Ctrl + Left-Click: Selects/Deselects the image segment at the location of the mouse pointer.

About

No description, website, or topics provided.

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published