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removed typo
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ChristopheLegendre committed Jan 26, 2023
1 parent d5fdf66 commit 9bd5e56
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion prep_vcfs_somatic/prep_vcf_somatic_functions.sh
Original file line number Diff line number Diff line change
Expand Up @@ -431,7 +431,7 @@ function phasing_consecutive_variants_in_strelka2(){
local CPUS=$4

echo "in ${FUNCNAME}: ${VCF} and BAM file is ${BAM}" 1>&2
echo "## Phasing 0bp-apart consecutives variants ..." 1>&2
echo "## Phasing 0bp-apart consecutive variants ..." 1>&2

mycmd="bash ${DIR_PATH_TO_SCRIPTS}/strelka2/strelka2.phasing_consecutives_variants_as_blocs.sh ${VCF} ${BAM} ${TUMOR_SNAME} ${CPUS}"
echo ${mycmd} 1>&2 ;
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