neurondm docs composer more mappings now that we pull entailed

tgbugs · May 17, 2023 · a561cdd · a561cdd
1 parent 580c0eb
commit a561cdd
Showing 1 changed file with 6 additions and 1 deletion.
diff --git a/neurondm/docs/composer.py b/neurondm/docs/composer.py
@@ -25,14 +25,19 @@ def for_composer(n):
         dest_presyn = lg(n, ilxtr.hasAxonPresynapticElementIn),
         dest_sens = lg(n, ilxtr.hasAxonSensorySubcellularElementIn),
         dest_dend = lg(n, ilxtr.hasDendriteLocatedIn),
-        path = lg(n, ilxtr.hasAxonLocatedIn),
+        path = lg(n, ilxtr.hasAxonLocatedIn),  # TODO pull ordering from partial orders (not implemented in core atm)
         #laterality = lg(n, ilxtr.hasLaterality),  # left/rigth tricky ?
         #projection_laterality = lg(n, ilxtr.???),  # axon located in contra ?
         species = lg(n, ilxtr.hasInstanceInTaxon),
         sex = lg(n, ilxtr.hasBiologicalSex),
         circuit_type = lg(n, ilxtr.hasCircuitRolePhenotype),
         # there are a number of dimensions that we aren't converting right now
         dont_know_fcrp = lg(n, ilxtr.hasFunctionalCircuitRolePhenotype),
+        phenotype = (lg(n, ilxtr.hasPhenotype)  # FIXME currently a grab bag of other types here
+                     + lg(n, ilxtr.hasMolecularPhenotype)
+                     + lg(n, ilxtr.hasProjectionPhenotype)),
+        forward_connection = lg(n, ilxtr.hasForwardConnectionPhenotype),
+        # TODO more ...
     )