Biotrans

A Python library for preprocessing and augmentation of biological signals.

• The library works with signals in a list and np.array format.
• Comprises a comprehensive, diverse range of signal transformations.
• Based on numpy, scipy and open sourced libruaries.
• Supports mutli-channel signals.
• Provides tutorials and vizualisations.
• Supports for Python 3.7 and higher.
• Easy integration with PyTorch, Tensorflow, Keras.

Table of contents

• How to use
• Installation
• Documentation
• Time-domain transforms
• Frequency-domain transforms
• License
• Citing

How to use

Installation

Conda

1. Install anaconda
2. Run scripts/create_env.sh bash file to install the dependencies and set up the conda environment

Git

1. Install the dependencies specified in scripts/requirements.txt
2. Install the latest version of the libruary from GitHub:

pip install -U git+https://github.com/tatigabru/transforms

Time-domain transforms

License

This project is licensed under the terms of the MIT license. See LICENSE for more details.

Citing

@misc{signaltransforms,
  author = {Tati Gabru},
  title = {Python Libruary for Biological Signals Transforms},
  year = {2020},
  publisher = {GitHub},
  journal = {GitHub repository},
  howpublished = {\url{https://github.com/tatigabru/transforms}}
}