check outdir

tanghaibao · May 10, 2024 · d9dc510 · d9dc510
1 parent 45a8806
commit d9dc510
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Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml
@@ -21,11 +21,11 @@ jobs:
           cache: 'pip'
 
       - name: Install BEDTools (Linux)
-        run: sudo apt-get install bedtools
+        run: sudo apt-get install bedtools freetype imagemagick
         if: matrix.os == 'ubuntu-latest'
 
       - name: Install BEDTools (macOS)
-        run: brew install bedtools
+        run: brew install bedtools freetype imagemagick
         if: matrix.os == 'macos-13'
 
       - name: Install dependencies

diff --git a/jcvi/graphics/grabseeds.py b/jcvi/graphics/grabseeds.py
@@ -618,7 +618,7 @@ def seeds(args):
     ff = opts.filter
     calib = opts.calibrate
     outdir = opts.outdir
-    if outdir != ".":
+    if outdir and outdir != ".":
         mkdir(outdir)
     if calib:
         calib = json.load(must_open(calib))