ignore blank line in bed

tanghaibao · Nov 18, 2023 · 1e1fbd2 · 1e1fbd2
1 parent a280f7f
commit 1e1fbd2
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/jcvi/formats/bed.py b/jcvi/formats/bed.py
@@ -151,7 +151,7 @@ def __init__(self, filename=None, key=None, sorted=True, juncs=False, include=No
             return
 
         for line in must_open(filename):
-            if line[0] == "#" or (juncs and line.startswith("track name")):
+            if line[0] == "#" or (juncs and line.startswith("track name")) or line.strip()=="":
                 continue
             b = BedLine(line)
             if include and b.accn not in include: