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Squashed 'src/zfp/' changes from e8edaced..f39af726
f39af726 Release 1.0.0 82a557c8 Set release version and date 7f84893b Clarify ZFP_VERSION_DEVELOP meaning and value 074f0109 Point badges and documentation to release1.0.0 branch 1fc3539e Align license.rst with LICENSE ed01090c Add version_tweak to zFORp 9ac63801 Document change in ZFP_VERSION mapping fff64a14 Revert to gencodec for consistency with zfpcodec 07485e1a Update ReadTheDocs badge link e1af8487 Bump copyright date, add copyright notice to zfp.hpp 2445a7c3 Bump zFORp_library_version 3ed74345 Ensure make clean removes libcfp 6c66c665 Proofread and ensure documentation is up to date 9cc3a25b Update expected testzfp errors for large arrays 8efecf10 Fix various bugs in diffusionC 49db1371 Fix incorrect order of distance() arguments afabe40b Add cfp references, pointer, iterators, serialization to CHANGELOG 302d0a73 Fix C89 incompatibility in iteratorC.c a9203c64 Add missing const_array::params() and const_array::set_params() c6974ace Add zfp_field_blocks() to zFORp 46deb610 Update execution doc with planned future capabilities e4357d0e Cosmetic changes to compression modes doc f88a4131 Add variable-length code example 3deba5f1 Add Apple clang OpenMP instructions bc29521b Update authors, zfp homepage URL 43d29aff Update links to zfp applications c9ec980f Update zfp homepage URL 3c544564 Update authors and contributors 4ce851be Update versions.rst to align with CHANGELOG.md 44d4f849 Remove unused variable in decoder test 9a9a2263 update doc versions and add some missing changes 962a48bd update version in license and tests c86be611 Update zfpy version number c99a41f4 Fix mismatched memory (de)allocation calls 6825ee26 Add missing space between literal and identifier 91f1823f Update version identifiers for next release cb618438 Correct suffix for examples/array2d.h 539db086 Update CHANGELOG to reflect directory restructuring 1c66f76b Silence compiler warnings in tests b2ea0416 Remove -I../array 1bcbf0ec Ensure proper make clean in examples 8eecbfbb Document new name for zFORp module ec96f631 Document lower bound on maxbits in expert mode c597619c Fix compiler warnings in tests b1ce0c16 Merge branch 'develop' into refactor/install-directory 73aeb464 Fix compiler warnings/errors in examples 7edcd917 Update time limit on gitlab tests 725f5cd7 remove fortran modules directory from git tracking 982ca868 Update cfp header includes, rename main cfp header 0f530708 Silence copy constructor warning 54966d1e Fix gmake build issues 7c9b4d23 Merge branch 'develop' into refactor/install-directory 81dbdd02 Fix Fortran GNU builds and compiler requirements 97fa1d75 Disable thread safety checks when OpenMP is absent 6c46dccf Update makefiles and fix a few inconsistencies f0899413 Clarify that low-level API ignores execution policy 736581dd Silence implicit conversion warnings 86ffc4f2 Rename ZFP_VERSION_DEVELOP, remove ZFP_VERSION_RELEASE 0135c037 Merge branch 'bugfix/thread-safety' into develop (resolves silx-kit#154) 20a2efdc Use zfp_field_blocks() in codec 5c424bbf Update CHANGELOG [skip ci] 11f99284 Enabled OpenMP with testviews e89d8038 Handle empty field in zfp_field_blocks() 0447f7e5 Make codec thread-safe b9166ad1 Add LDFLAGS to support -lomp on Mac 5190cae2 Add zfp_field_blocks() e1ac5e4e Merge pull request silx-kit#165 from DimitriPapadopoulos/codespell 20e62c58 Fix typos found by codespell 05b3f4c5 Update fortran module name and move internal codec headers c13a6c7b Update bitstream.c include in cuda [skip ci] 9e78178a Fix include in zfpy 3674669d Update zforp install location 5fd6de39 update zfp util f56070f6 updated tests fixed additional missing includes 615e86f4 Update headers in examples and fix bad include eeac3a28 Updated cfp includes, fixed build issues c7326188 Update cmake b2366c0e updated inline src and moved cfp src 4aafbc81 Update hpp include guards afe6a01f Update includes for internal headers 013210b0 Update includes for all non-internal headers e1e4840c Move include files 9b0d278f Update where gitlab cpu tests are run 26678cde Replace stdio with iostream in testviews bb59d845 Fix minor documentation issues 537c1205 Add compressed-array example cc2e8500 add policy mode validation checks 938ffd2e change exec policy params to use void* 7335959b Merge branch 'refactor/stream-offsets' into develop 24bcfa28 Merge branch 'develop' into refactor/stream-offsets 2d975ce8 Correct type mismatches to silence compiler warnings bf718a60 Update bitstream types in CUDA tests 9a1e3409 Introduce bitstream_{offset,size,count} types for 64-bit support b40ab53d temporarily disable actions side of cmake test 9dcf734c temporarily disable actions side of cmake test 72fcac57 Add cmake version checking to tests 980155a8 Merge pull request silx-kit#162 from jonashaag/patch-1 cf7bd9ea Fix exception handling in compress_numpy 5d3ac203 Revert accidental change to ZFP_VERSION_RELEASE define 0335096e Fix version.h compile error dd915b95 Update version files to support intermediate version numbers 15d77178 Move memory management to internal namespace 0f06782e Rename word -> stream_word 1d6fbe59 Silence compiler warnings in tests f49a7fe5 Silence compiler warnings in tests baaa782a Remove debugging code from diffusion example 76d684de Update CMakeLists to support OpenMP with AppleClang 19b261d6 Add macros for constructing version number and string ad926b6a Add back references to execution section in docs f6880a6a Add silx-kit#150 to CHANGELOG d36f54d9 Fixes silx-kit#150 6bfd003a Revert attempted fix for silx-kit#150 e620e546 Undo failed attempt to fix silx-kit#150 a7c6047f Attempted fix for issue silx-kit#150 (cmocka macOS build) da4e2829 Allow setting BIT_STREAM_WORD_TYPE on make line 33065d23 Add support for generic codec in diffusion example f4e0850c Clarify that rounding mode, daz supported only on CPU 2b03babb Add conda zfp package and zarr application to docs 4a33aab5 add missing zfp field and stream tests 38e3cbbe Silence const compiler warnings in ppm aeb707c1 Add CUDA tests for unsupported 4D data 5fe5ed19 Change name of actions workflow ba2df4bc move gitlab cpu tests to new system a674bf58 Remove Travis CI files fd573184 Move status badge from travis to actions 64e5db65 Update python cmake build scripts 7ad84769 Add python build hints to tests 50774dcf Enable cython action temporarily disable win tests d42fb0ee enable actions pytests and split py adv decompress test into bytes/memview versions afac3f94 made test output more verbose 31902956 remove unneeded test code 84fb3d88 Make array::set(0) zero-initialize array 323e3e70 Move Cache and Store to internal namespace eb6cd287 Bug fix: reopen codec when compacting store 122918c4 Fix incorrect loop counter types in simple.c 662fc0f4 Add size_bytes() to cfp 05156f50 Replace ieeecodec with generic codec templated on scalar type 8441d706 Fix inconsistent coding style in zfpcodec 142a11f7 Setup github actions config 5555333a add promote/demote util tests b91dcafb Added field_metadata failure tests 6aec9dc4 compilation error fix de381394 Fix unused variable warning d65af032 Add link to MVAPICH2-GDR 5c991daa Add/rename top-level files for E4S compliance 99e526cd Document CUDA limitations 22beacb0 Document ZFP_WITH_CUDA in config file 57c50e03 Add FAQ on error distributions bbfb88db Clarify FAQ silx-kit#17 on violated tolerances 1cd5978f Add printf FAQ 95dc3582 Merge pull request silx-kit#148 from vicentebolea/cmake-fix-include-dir b6f344ff CMAKE: ZFP_INCLUDE_DIRS avail at configure time 310e12d5 Merge pull request silx-kit#147 from vicentebolea/add-zfp-cuda-var 67036823 Update zfp-config.cmake.in f5d8c282 Add templated encode/decode tests f65ac443 Move cuda testing to new machine 5079b895 Extend and include testviews in tests 2d0ba85f Fix view const accessors a922f640 Clean up .travis.yml 1a4565c6 Force gcc-4.9 on Travis CI 416e1957 Require CMake 3.9 in tests af933bb9 Suppress CMake warning about unused ZFP_OMP_TESTS_ONLY f718c561 Add nullptr_t proxy pointer constructors d83d3432 Update README build report badge bfbaa992 Undo attempted codecov fix 1e74a04c Add mask parameter to header.size_bytes() 62569178 Bug fix: overflow due to subnormals (resolves silx-kit#119) 3f768fad Fix zfp_field bugs that confused precision and byte size ecbbf763 Fix missing codecov uploads ef8b8791 Document C++ wrappers for low-level API 8e790cbf Update installation instructions 88164401 Complete citation record 0ff612ec Merge pull request silx-kit#141 from researchapps/add/github-citation cd14c063 GitHub has recently added this standard file, CITATION.cff, that will render a sidebar link to easily copy paste bibtex information to cite the work. This should be useful for zfp 33eed2fb Fix missing size_t and declarations in tests c3a7b334 Fix missing size_t types and casts 19107376 Fix C89 incompatibility in tests a85609f0 Build cmocka using prescribed build type for MSVC 149de0a5 Update cfp tests to use size_t 416d16b8 Complete size_t transition for array tests 83d572f1 Fix broken C89 support in tests 45c9e82b Silence warnings and use size_t over uint in tests 7450b728 Silence miscellaneous compiler warnings ce5c5b3a Silence compiler warnings 4e49b318 Fix gtest deprecation warnings 6443612c Merge branch 'develop' of github.com:LLNL/zfp into develop 02872e2a added templated encode/decode block tests 72278260 Merge branch 'refactor/64-bit-indexing' into develop 954390e1 Silence compiler warnings in tests 2a2ff357 Update docs with new zfp_field and function signatures 28a3858b Silence compiler warnings in tests d97e589b Update examples and utils to use size_t array dimensions b756eb04 Handle missing size_t/ptrdiff_t c3672137 Update Fortran API to support 64-bit indexing 64f71dde Update Python API to support 64-bit indexing 5f3ad37d 64-bit indexing: replace uint/int with size_t/ptrdiff_t 24bcaf80 Organized tests/array directory ea8124f8 merged cpp namespace into zfp namespace 01ccb95d Clarify constraints on rate in docs b47749f5 changed gtest version to fix compilation issues with non-gnu linux compilers 496a416c fixed macro expansion issue (commit issue fix) 1c5bc2ab fixed macro expansion issue c9adc2a4 fixed macro expansion issue 1f5fb92a Rename Travis files 62f35034 Merge branch 'feature/const-arrays' into develop 5bdd22f3 Merge branch 'develop' into feature/const-arrays 26c5eb9d Do not reset rate in zfp::index::implicit::clear() a571d435 Add appropriate casts around CHAR_BIT * sizeof() constructs 5c7f6ecc Add dispatch function for integer encoding/decoding 6cf405a2 added in const array bitstream checksum test 5f6394ee disable travis tests temporarily 6a7364b3 Fix docs on array serialization constraints cea4ff6c Merge branch 'feature/unbiased-error' into develop 8a4487e7 Document ZFP_ROUND_* macros bd2b1545 Fix CUDA rounding issue due to incorrect NBMASK 3205d721 Add rounding modes to CUDA implementation 4f3f1d4a Disabled travis linux testing due to new usage restrictions caf14c7f Added index names to test reporting a949b1c5 Added block index tests for const arrays 2968e8e0 Specialize coding for unconstrained rate 74a11efe Merge pull request silx-kit#137 from jwsblokland/bugfix/cmake 2fba7f69 CMake: (fix) OpenMP dependency. f25982ad Merge branch 'misc/travis-update' into develop eb1d4c2d Discontinue xcode7.3 tests e5a55f76 Fix build errors 4f409922 Added const array checksum tests 97044629 Only call cudaGetDeviceProperties once. fcae077d Add ability to specify CUDA compilation flags. 8a4db7fb Added in tests for multiple precision/accuracy compression mode values fb4d7a61 Fixed uninitialized value error in test fixture 09a9f761 Initial work on const array tests 2d92b09d moved version info to zfp/version.h header 6389b89d Implemented fixes discussed in issue silx-kit#126 12772bd4 Fix incorrect math in relative-error bound FAQ a51171f1 Document promotion/demotion of scalars 3ddbd24d renamed header.size() to header.size_bytes() to better clarify its functionality 6b2da922 strip out redundant CI builds 11341f46 Add new rounding mode: ZFP_ROUND_FIRST 6d24ac9f Fixed various CI test issues 928bbceb refactored GitlabCI config to be more extensible f3736ca5 Update diffusion documentation 321ce7fc Add codec and index documentation 68099ac6 Add const_array support for expert mode 1d64a161 Fix off-by-one error in ZFP_MAX_BITS aabe13f9 Documentation: Use checkmarks in tables 8ded86bd Add FAQ on C vs. Fortran order ebe66d62 Add FAQ on compressed storage size d7686bc4 Bug fix: compressed block size in reversible mode (resolves silx-kit#127) 35bc789a Rename zfp::codec derived classes d9117612 Rename conflicting zfp_stream* codec::zfp::zfp 6b6602b6 Add zfp::codec namespace 24f9b070 Add support for const_array in diffusion example d2932309 Fix incorrect rate granularity in FAQ c733c923 Document const_array rate granularity and zero initialization 1d38a7f0 Refactor and fix bugs in arrays, store, index, codec 6993e72d Add exception on cache overflow 93780bb1 Add size_bytes() to fixed-rate arrays 4abe3d5c Fix incorrect cache size initialization 71d24c01 Add missing size_bytes() for block stores 4142c999 Remove debug info bb4e567a Add const_array documentation 9f2b09c8 Add missing size_bytes() for block caches fee7e80e Consolidate shape() and block_shape() functions b2816e2e fix compiler error during cuda testing 0b4f9a3b Add 1D, 2D, 4D const_arrays a56a749f Merge branch 'develop' into feature/const-arrays dd174cd2 Update documentation on exceptions 0ecdc57c Add zfp_field layout functions 4a0d1f3e Use zfp_bool in examples 0ceec10c Ensure diffusionC builds with cfp ccdec24e Add zfp_bool documentation 53b69c4d Document ppm example ee3c9fe2 Refactor array/cache/store to support const_array 10612d47 Exclude redundant header inclusion aa71d4ad Improve POD memory allocation 35086732 Add inclusion of missing headers 1de54120 Add zfp_config for const_array constructor 695886a7 Move install command to utils subdirectory f4e55986 Change gtest build paths (resolves silx-kit#108) ab07ab95 Remove zfp utility as install target 1fa8dbbe Add zfp utility as install target (resolves silx-kit#122) a215e19c Merge branch 'bugfix/omp-large-arrays' into develop 67ab4c98 Avoid Win32 size_t overflow b09d079a Resolves silx-kit#125 1051621b Pick up .travis.yml fix 915e0414 Squashed commit of the following: f784bbeb Revert to OpenMP 2.0 to accommodate MSVC e525e484 Fix OpenMP 32-bit int overflow; require OpenMP 3.0 f668af3d Add support for querying rate, precision, accuracy d24b528e Fix bad link in file compression docs a9694007 Bug fix: CUDA bit streams limited to 2^31 bits 8d09ee13 Silence compiler warnings abc76964 Correct comments/code for coding partial/strided blocks 4fd72928 Rename cfparrays.*; add cfp/src/template directory 779b3665 Minor improvements to simple.c 5cefb373 Clarify zfp_read_header() documentation 7e68696d Consolidate intro and overview sections 1829523e added small fixes for zfp testing, new gitlab CI functionality 74364a8a Merge branch 'feature/cfp-references' into develop 71f13b81 Refactor cfp header API to align with accessors ccdc3ec6 Silence PGI compiler warnings 5feae4ca Support no alignment via ZFP_CACHE_LINE_SIZE=0 ebb172d0 Propagate zfp_private_defs to tests a048b3f5 Expose ZFP_CACHE_LINE_SIZE to address PGI compiler bug e11004ae Add cfp serialization documentation bf09645b Update Makefiles to simplify macOS builds 7eb57fa0 Clean up cfp docs 7ab1ed61 Update docs to use zfp_bool 9c6032bd Make cfp its own section 6f111ce2 Update cfp documentation 61f7b2ca Add zfp_bool documentation ac22c584 Clean up merge and :c:expr: Sphinx issues 6db9cf04 Merge branch 'feature/cfp-references' into develop 661cd2aa Add cfp multidim iterator tests dca15d47 Ensure consistent cfp parameter names and APIs 72e4fd1f Remove unnecessary casts b2e65852 Add iterators to diffusionC; ensure C89 compatibility 88906c39 Add cfp random-access iterators and const qualifiers; refactor header 03f213ba Rename and reorder accessor members f7682e65 Refactor cfpheader to avoid circular inclusion 87b770ea changed booleans from int to zfp_bool type 6b8e03dd Added cfp header tests b20b2bb4 added header functionality to cfp 75c2a59c Avoid importing unused cpython array for compatibility with pypy 50aa4f19 changed uint8_t and memoryview test 29d7de12 change to void, add tests similar to ensure_ndarray 5cb7a325 remove print cython version 89b19d3f remove apt-get cython3 a4d6edac change cython3 to cython 2739f2e7 upgrade pip first 2fc75483 change back to pip 1d9524a5 remove upgrade pip b560ddcb use pip3 instead pip 66d45d1c change cython3 in .travis.yml 0bed27e1 enable cython3 upgrade on xenial 3c2c0612 add cython version check in travis.sh 8269e09b check cython version in zfpy.pyx bf05fb43 change to void * f0f82406 add <char*> in stream_open 31d8c51c remove const for test a3c572a1 Update python/zfpy.pyx 14da5114 Update python/zfpy.pyx a75ef261 replace bytes of compressed stream to uint8_t 1f4973df fixed missing semi-colon ee58ae34 changed cfp 4d fixed rate tests to prevent future problems a36d4063 Fixed issues with 4d checksum tests 1c312335 Fix failing 4D cfp test due to lack of precision 29c4f5a9 Changed out of date uint references to size_t in docs 0541ec97 Added 4d cfp documentation 15187ed8 Disabled broken checksum tests 42d3c7fe Added cfp 4d tests a79c4930 Merge branch 'develop' into feature/const-arrays 0817b086 Add documentation for 4D arrays a5959fe0 Use python3 with sphinx documentation 6f829dd5 Enable 4D array support in cfp 78c2c51f Merge branch 'develop' into feature/cfp-references c6bcb098 Remove temporary fix to private_view::get() 2fbe0084 Merge branch 'refactor/arrays' into develop 8b794fb8 Fix ppm issues with clamping; add chroma dimensionality parameter 33149742 Add support for 1D chroma blocks in ppm 1fd3a5f8 Revise zfp_bool type for C++ and update function signatures 50b635b4 Add tests for 4D compressed arrays 635db5c5 Fix minor issues with 3D array tests 915ba215 Fix copy-paste errors uncovered by tests bdb2623c Fix ppm range expansion bug 5816bcde Add ppm example d2c844c6 Add pointer and iterator tests for views 6a544b05 Add missing const_pointer and const_iterator friends to views 8e1d8dcd Fix testzfp-large tolerances for new default cache size 23bb66f6 Remove obsolete 4D deserialization test 935c3893 changed ctor name 67383cc4 Correct order of arguments in cfp {ptr,iter}.distance bf58a4ad Prepare cfp for 4D arrays 02a403ee Add testzfp tests for 4D array classes fdd14c9e Add 4D compressed-array classes 044cbe14 Add offset dereference operator tests for pointer and iterators 35d5c8cb Fix copy-paste error in iterator3 9761ee91 Update docs for iterators and views cf899daf Fix bad typedefs in iterators 9bf99934 Refactor accessors using container template 29cbdf76 Changed cfp to use safer static casting 6bd6d724 Change to cfp header/array typedefs to solve issue with pre gcc 4.8 fa0d09c4 add cfp_header stubs to prep for new zfp header class 5b687458 Promote all iterators to random access; prepare for view iterators 19720bf7 Clean up documentation 520596bd Fix incorrect reads through private_view f3e1ca9a Fix zfp_stream_maximum_size() estimate in reversible mode ca97dfdc Extra cleanup & organization pass for cfp tests/docs d1d185c1 fix iteratorC formatting to match new output types 97749bd0 Add missing functionality for 2d/3d cfp_iter, move cfp fully from uint/int to size_t/ptrdiff_t 3bdb7fa3 zfpy 0.5.5 8f81ae47 Update FAQ on relative error 2dafa9f8 Update cfp pointer docs 8487b618 Add missing functionality for 2d/3d cfp_ptr d83c2c81 Fix cfp naming consistency, add missing 1d functionality 68bc279b Mention const pointer availability b5255c5a Update docs to reflect 64-bit support 0df472c3 Small tweak to cfp docs 2104f25c Add const_pointer tests 97818431 Add const iterator tests 0086df3a Add pointer comparison tests a29e83a9 Const accessor constructors must accept const containers 3a33078b zfpy 0.5.5-rc5 cf8740a1 zfp 0.5.5-rc4 94ac5c00 Add alignment, header tests 739ea17c zfpy 0.5.5rc3 61048ab2 zfpy rc2 37096f14 Update docs for new const accessors, serialization, etc. 9d0d1df3 Fixed iteratorC to match output with iterator example 1167e3d5 Docs changes: fix ptr/iter names, add missing functions, fix broken links ba0d5f46 Add zfpy-wheels long description 64f1b58a Update version 8d0f76fd Windows friendly setup.py 33f9c665 Add URL 0f148ecf Build wheel with setup.py 35b5cafd Workaround for conflicting container_type declarations ad613305 Resolve conflicting container_type in private views 1c4b9d9b Replace array with container_type in views 2ecc4686 Make accessors return const_reference; add pointers to views cc332853 cfp accessor documentation first pass 27aca9c3 Fix iterator ~3u bug 20d81aa2 Add full 64-bit support to compressed arrays da4a71f2 Silence type conversion warnings f7893523 Rewrite zfp codec to use zfp::cpp templates 80b7841a Add C++ wrappers around low-level C API 470a743d Add typename to please MSVC 14 6a7ee093 Change header API to rely on constructor e30a70a7 Replace last occurrence of stream_word_bits 45c508d0 Plug memory leak in zfp::array::construct 9548b940 Plug memory leak in block store abc6922e Clean up codec and use stream_alignment() 90009fd0 Add stream_alignment() function 4e6f0315 Fix using declarations for MSVC a42b52d6 Work around googletest iterator bug f6a8be00 Update compressed_data() API in cfp bc55d5e7 Fix codec constructors 4d4001e8 Remove obsolete code 81e577dd Refactor array serialization 24270e88 Add Boolean type 229a37df Respect cache size request 6f0b78e4 Move codec specializations 6e7c12b5 Use std:: prefix in memory allocation where appropriate 878b329c Add type traits 3539cc84 Reinstate private views 4f2525c9 Fix incorrect cache size initialization a688d9de Initialize array dimensions in constructor from view efb78225 Move codec from BlockStore to BlockCache 086a156a Rename storage -> store d8b099c9 Fix codec source file names a7b5a6d5 Update tests to support new array API d2ca8ae6 Add new block storage + cache and refactor arrays + views ecd4fb49 Add specialized allocator for void* 3b12f7c0 Made zfp memory alignment a compile-time macro 91e702f7 Add missing cbegin/cend to 2D and 3D arrays b98c864b Update 3D references, pointers, iterators, and views a2a7a2cf Fix incorrect pointer2 comparisons e8e1000c Update 2D references, pointers, iterators, and views b05afe92 Fix inconsistent relational operators 47e4c7ce Replace 1D view_reference with new generic reference 90eff650 Traverse array using new const iterator aacc4989 Refactor 1D references, pointers, iterators and add const versions 079c409f Fix Cython 'Assignment to non-lvalue' errors 2d787371 Remove trailing semicolons which Cython treats as errors a1a876c9 Fix make install clobbering existing gtest installations fc0ecac3 Optimized cfp references and arrays based on results of testing c4029cf4 Added cfp iterator example 08adb27d Fix typo in CXXFLAGS 0202b0be Check for undefined __STDC_VERSION__ to suppress warnings bc2fe6bf Add reversible mode to simple.c 1bb7955a Minor documentation changes 5254963d Added iterator tests 18f6b8ad Added proxy iterators bbcded58 Fix AppVeyor badge URL 74e8a145 Fix bad URLs e1b45152 Reorganize README file a05e2e52 Update license info per LLNL guidelines bcea8930 Update Appveyor project URL 05ef3411 Added tests for pointers and array flat ptr/ref 26be0ff9 Added pointer shifting/arithmetic and flat array ref/ptr accessors c8969dfa changed references to linear indexing 4079af78 Implemented cfp pointers 5710f291 Removed unnecessary export_ macro. ee7ecc23 Revert "Minor optimization of lifting transform." 92fca13d Minor optimization of lifting transform. 4cb27e2a Fixed linker errors. aa626692 Fixed LNK4217 linker warnings when using Visual Studio. Also removes .lib and .exp files created along executable file of a project using static zfp library. b515bd11 Fixed linker error LNK1114 when using Visual Studio. The fix required a change of name of zfp command line executable. 2ab06b3d hotfix: Fix wrong memset params order b1a4f8a0 set and copy added to cfp references, diffusion example updated to use new API d62a7f9e added get_ref to cfp arrays and get (value) to cfp refs (with associated tests) af30bdc2 Changed cfp_array initialization syntax to fix windows build issue 28decba3 cfp_arrayALL changed from raw pointer to struct wrapped pointer (prep for cfp refs) e748a9c9 Clean up code edf135f5 Add compressed block index bcf97058 Add variable rate support f80c5103 Add uncompressed block index 40ae50ce Return block size in codec e9f4743c Initial pass for 3D arrays 40ef12b7 Merge branch 'develop' of github.com:LLNL/zfp into develop 814c1108 Add reversible mode to simple.c 6fe05a5d Minor documentation changes fa79823c Merge branch 'misc/checksum-gen-tool' into develop 1c6144a9 updated cython for new checksum API b82d9e83 TODO: update cython for new test utils APIs 1a32165e Update cpp and CFP tests to conform to new checksum API e75a0b11 Extend zfpChecksumsLib API for original-input specific function (omits irrelevant parameters) 32b4637a Checksums now support tuples (key1, key2, value), where new key2 encodes array dimension lengths. Encode, decode, endtoend all updated 93b602ce Checksum (key, value) lookup working for encode, decode, and endtoend tests. zfpChecksumsLib updated to handle (key, value) lookup 9e8a000e Checksum generation working for encode, decode, endtoend tests, across {dimensionalities 1-4}x{all scalar types} 00b944b0 endtoend tests can print (key, value) = (descriptor, checksum) pairs when compiled with flag PRINT_CHECKSUMS 881d8418 Update links to zfp website 6da6eff2 updated cython for new checksum API d85b6fa4 Remove redundant CUDA h2d transfers 3119f94d add short mention of third-party tools in overview a8def9af adding a short note and link for h5z-zfp 068f8150 Merge pull request silx-kit#61 from maddyscientist/feature/cuda_encode_unroll 110a4945 Merge pull request silx-kit#67 from maddyscientist/feature/cuda_decode_unroll 4cfd5882 TODO: update cython for new test utils APIs 070e4e4b Update cpp and CFP tests to conform to new checksum API cf8c779d Extend zfpChecksumsLib API for original-input specific function (omits irrelevant parameters) bf577f52 Checksums now support tuples (key1, key2, value), where new key2 encodes array dimension lengths. Encode, decode, endtoend all updated 64ef0ea9 Checksum (key, value) lookup working for encode, decode, and endtoend tests. zfpChecksumsLib updated to handle (key, value) lookup 208c6bbf Checksum generation working for encode, decode, endtoend tests, across {dimensionalities 1-4}x{all scalar types} 680fbb94 endtoend tests can print (key, value) = (descriptor, checksum) pairs when compiled with flag PRINT_CHECKSUMS 034f37bd Fix missing CUDA test function from previous refactor commit 047da679 Merge branch 'refactor/combine-testcases' into develop 7b75e6ce Remove fatal fail_msg() calls from setupCompressParam() becuase it would terminate some looping tests early ec777124 Minor test changes: print uint64 in hex format, add "ERROR: " prefix to nonfatal print statements cb784f8f Refactor compress/decompress, and hash bitstream/array to separate functions for re-use in endtoend tests 7c751efa Combine endtoend testcases for CUDA, similarly to past 2 commits. Also perform some refactoring across endtoend testcode a608eb9b Combine testcases for OpenMP endtoend tests, such that one testcase now tests 1 compression mode, varying the compression parameter (3), threadcount (3), and chunk size (3). 32fa7e76 Combine testcases for serial endtoend tests, such that one test case tests a compression mode across all 3 compression parameters, covering all compress/decompress checksum comparisons, without prematurely ending at the first failure 045ca9cb Refactor encode/decode block special value tests (10 testcases become 1) a7e77cc1 Fix typos in CFP documentation ede3bee7 Merge branch 'develop' into feature/cuda_decode_unroll 989e1aa6 Merge pull request #1 from LLNL/develop b7dcdb01 Unroll optimization for CUDA encode scatter partial functions ae26c99c Merge pull request silx-kit#65 from maddyscientist/feature/cuda_inline_constants 76112759 Let the compiler inline the permutation lookup table into registers rather than using __constant__ memory 4444fd30 Fix C++ undefined behavior with last commit. All tests now pass. bee1d74f Add support for unbiased errors and tighter error bounds 9cb007ff CUDA optimization: unrolling optimization gather_partial functions f7632023 Fix RuntimeError using int64 in zfpy on Windows (Pull Request silx-kit#60) d488a6f6 Appveyor: build zfpy on MSVC release builds with python 2.7 and 3.5 (expect zfpy failures on MSVC) 8f175692 Fix mixed declarations and code c0a7acc4 Update contact email 5384b571 Merge branch 'release0.5.5' into develop git-subtree-dir: src/zfp git-subtree-split: f39af72648a2aeb88e9b2cca8c64f51b493ad5f4
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