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surveilr · Oct 21, 2024 · 446869a · 446869a
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diff --git a/404.html b/404.html
diff --git a/404.html.br b/404.html.br
diff --git a/blog/advanced-polyglot-orchestration/index.html b/blog/advanced-polyglot-orchestration/index.html
diff --git a/blog/advanced-polyglot-orchestration/index.html.br b/blog/advanced-polyglot-orchestration/index.html.br
diff --git a/blog/direct-messaging-service-pattern/index.html b/blog/direct-messaging-service-pattern/index.html
diff --git a/blog/direct-messaging-service-pattern/index.html.br b/blog/direct-messaging-service-pattern/index.html.br
diff --git a/blog/evidence-based-decision-making-pattern/index.html b/blog/evidence-based-decision-making-pattern/index.html
diff --git a/blog/evidence-based-decision-making-pattern/index.html.br b/blog/evidence-based-decision-making-pattern/index.html.br
diff --git a/blog/index.html b/blog/index.html
diff --git a/blog/index.html.br b/blog/index.html.br
diff --git a/blog/power-of-sql-and-sql-views/index.html b/blog/power-of-sql-and-sql-views/index.html
diff --git a/blog/power-of-sql-and-sql-views/index.html.br b/blog/power-of-sql-and-sql-views/index.html.br
diff --git a/blog/quality-management-pattern/index.html b/blog/quality-management-pattern/index.html
diff --git a/blog/quality-management-pattern/index.html.br b/blog/quality-management-pattern/index.html.br
diff --git a/blog/rssd-excel-portability-sql-power/index.html b/blog/rssd-excel-portability-sql-power/index.html
diff --git a/blog/rssd-excel-portability-sql-power/index.html.br b/blog/rssd-excel-portability-sql-power/index.html.br
diff --git a/blog/sql-based-etl-elt/index.html b/blog/sql-based-etl-elt/index.html
diff --git a/blog/sql-based-etl-elt/index.html.br b/blog/sql-based-etl-elt/index.html.br
diff --git a/blog/surveilr-core-vs-patterns/index.html b/blog/surveilr-core-vs-patterns/index.html
diff --git a/blog/surveilr-core-vs-patterns/index.html.br b/blog/surveilr-core-vs-patterns/index.html.br
diff --git a/blog/surveilr-integration-engine/index.html b/blog/surveilr-integration-engine/index.html
diff --git a/blog/surveilr-integration-engine/index.html.br b/blog/surveilr-integration-engine/index.html.br
diff --git a/blog/vendor-assessments/index.html b/blog/vendor-assessments/index.html
diff --git a/blog/vendor-assessments/index.html.br b/blog/vendor-assessments/index.html.br
diff --git a/blog/why-stateful-integration/index.html b/blog/why-stateful-integration/index.html
diff --git a/blog/why-stateful-integration/index.html.br b/blog/why-stateful-integration/index.html.br
diff --git a/contact/index.html b/contact/index.html
diff --git a/contact/index.html.br b/contact/index.html.br
diff --git a/index.html b/index.html
diff --git a/index.html.br b/index.html.br
diff --git a/insights/insight-1/index.html b/insights/insight-1/index.html
diff --git a/insights/insight-1/index.html.br b/insights/insight-1/index.html.br
diff --git a/insights/insight-2/index.html b/insights/insight-2/index.html
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diff --git a/insights/insight-3/index.html b/insights/insight-3/index.html
diff --git a/insights/insight-3/index.html.br b/insights/insight-3/index.html.br
diff --git a/insights/why-sqlite-for-rssd/index.html b/insights/why-sqlite-for-rssd/index.html
diff --git a/insights/why-sqlite-for-rssd/index.html.br b/insights/why-sqlite-for-rssd/index.html.br
diff --git a/lib/service/diabetes-research-hub/drhctl.ts b/lib/service/diabetes-research-hub/drhctl.ts
@@ -1,4 +1,4 @@
-#!/usr/bin/env -S deno run --allow-read --allow-write --allow-env --allow-run --allow-net
+#!/usr/bin/env -S deno run --allow-read --allow-write --allow-env --allow-run --allow-net --allowffi
 
 import * as colors from "https://deno.land/std@0.224.0/fmt/colors.ts";
 import { Database } from "https://deno.land/x/sqlite3@0.12.0/mod.ts";
@@ -18,12 +18,9 @@ const toolCmd = isWindows ? ".\\surveilr" : "surveilr";
 const dbFilePath = "resource-surveillance.sqlite.db"; // Path to your SQLite DB
 
 const RSC_BASE_URL =  "https://raw.githubusercontent.com/surveilr/www.surveilr.com/main/lib/service/diabetes-research-hub";
-const UX_URL = "https://www.surveilr.com/lib/service/diabetes-research-hub";
+//const UX_URL = "https://www.surveilr.com/lib/service/diabetes-research-hub";
 //const UX_URL = "http://localhost:4321/lib/service/diabetes-research-hub";
 
-
-
-
 // Helper function to fetch SQL content
 async function fetchSqlContent(url: string): Promise<string> {
   try {
@@ -43,7 +40,6 @@ async function fetchSqlContent(url: string): Promise<string> {
 }
 
 
-
 // Helper function to execute a command
 async function executeCommand(
   cmd: string[],
@@ -165,7 +161,6 @@ if (Deno.args.length === 0) {
 // Store the folder name in a variable
 const folderName = Deno.args[0];
 
-
 // Define synchronous suppliers
 const deidentificationSQLSupplier: FlexibleTextSupplierSync = () =>
   deidentificationSQL;
@@ -177,6 +172,8 @@ let vvSQL: string;
 let uxSQL: string;
 
 
+// Check and delete the file if it exists
+await checkAndDeleteFile(dbFilePath);
 
 try {
   // Fetch SQL content for DeIdentification, Verification & Validation, and UX orchestration
@@ -185,12 +182,8 @@ try {
   );
   vvSQL = await fetchSqlContent(
     `${RSC_BASE_URL}/verfication-validation/orchestrate-drh-vv.sql`,
-  );  
-  // uxSQL = await fetchSqlContent(
-  //   `${UX_URL}/package.sql`,
-  // );
-  uxSQL = await fetchUxSqlContent(); // Fetch UX SQL content
-} catch (error) {
+  );       
+} catch (error) {                    
   console.error(
     colors.cyan(
       "Error fetching SQL contents for DeIdentification and Verification & Validation:",
@@ -200,9 +193,6 @@ try {
   Deno.exit(1);
 }
 
-// Check and delete the file if it exists
-await checkAndDeleteFile(dbFilePath);
-
 // Log the start of the process
 console.log(colors.cyan(`Starting the process for folder: ${folderName}`));
 
@@ -238,19 +228,11 @@ try {
   //Deno.exit(1);
 }
 
-// This function is for the dynamic combined view generation
-// try {
-//   await checkAndCreateCombinedView(dbFilePath);
-//   console.log(colors.green("View generation completed successfully."));
-// } catch (error) {
-//   console.error(colors.red("Error during view generation:"), error.message);
-// }
-
-
 try {
   console.log(colors.dim(`Performing UX orchestration: ${folderName}...`));  
-  await executeCommand([toolCmd, "shell"], uxSQLSupplier);
-  //executeSqlCommands(uxSQL); // Execute UX SQL commands
+  uxSQL = await fetchUxSqlContent(); // Fetch UX SQL content   
+  //await executeCommand([toolCmd, "shell"], uxSQLSupplier);
+  executeSqlCommands(uxSQL); // Execute UX SQL commands  
   console.log(colors.green("UX orchestration completed successfully."));
 } catch (error) {
   console.error(colors.cyan("Error during UX orchestration:"), error.message);

diff --git a/lib/service/diabetes-research-hub/study-specific-stateless/generate-cgm-combined-sql.ts b/lib/service/diabetes-research-hub/study-specific-stateless/generate-cgm-combined-sql.ts
@@ -16,7 +16,19 @@ function logError(db: Database, errorMessage: string): void {
 
 // Function to create the initial view and return SQL for combined CGM tracing view (first dataset)
 export function createUVACombinedCGMViewSQL(dbFilePath: string): string {
-  const db = new Database(dbFilePath);
+  const db = new Database(dbFilePath);  
+
+  // Check if the required table exists
+  const tableName = 'uniform_resource_cgm_file_metadata';
+  const checkTableStmt = db.prepare(`SELECT name FROM sqlite_master WHERE type='table' AND name=?`);
+  const tableExists = checkTableStmt.get(tableName);
+
+  if (!tableExists) {
+    console.error(`The required table "${tableName}" does not exist. Cannot create the combined view.`);
+    db.close();
+    return "";
+  }
+
 
   try {
     // Execute the initial view
@@ -78,6 +90,7 @@ export function createUVACombinedCGMViewSQL(dbFilePath: string): string {
   return combinedViewSQL; // Return the SQL string instead of executing it
 }
 
+
 // Function to generate the combined CGM tracing view SQL for the second dataset
 export function generateDetrendedDSCombinedCGMViewSQL(dbFilePath: string): string {
   const db = new Database(dbFilePath);

diff --git a/pagefind/fragment/en_149f28a.pf_fragment b/pagefind/fragment/en_149f28a.pf_fragment
diff --git a/pagefind/fragment/en_15ecd6e.pf_fragment b/pagefind/fragment/en_15ecd6e.pf_fragment
diff --git a/pagefind/fragment/en_d678e6c.pf_fragment → pagefind/fragment/en_23f88c9.pf_fragment b/pagefind/fragment/en_d678e6c.pf_fragment → pagefind/fragment/en_23f88c9.pf_fragment
diff --git a/pagefind/fragment/en_2653dec.pf_fragment b/pagefind/fragment/en_2653dec.pf_fragment
diff --git a/pagefind/fragment/en_9b765a8.pf_fragment → pagefind/fragment/en_27c0483.pf_fragment b/pagefind/fragment/en_9b765a8.pf_fragment → pagefind/fragment/en_27c0483.pf_fragment
diff --git a/pagefind/fragment/en_2961a0b.pf_fragment b/pagefind/fragment/en_2961a0b.pf_fragment
diff --git a/pagefind/fragment/en_2b1255f.pf_fragment b/pagefind/fragment/en_2b1255f.pf_fragment
diff --git a/pagefind/fragment/en_9c34aff.pf_fragment → pagefind/fragment/en_322cb78.pf_fragment b/pagefind/fragment/en_9c34aff.pf_fragment → pagefind/fragment/en_322cb78.pf_fragment
diff --git a/pagefind/fragment/en_35139ef.pf_fragment b/pagefind/fragment/en_35139ef.pf_fragment
diff --git a/pagefind/fragment/en_62d3a88.pf_fragment → pagefind/fragment/en_36b18eb.pf_fragment b/pagefind/fragment/en_62d3a88.pf_fragment → pagefind/fragment/en_36b18eb.pf_fragment
diff --git a/pagefind/fragment/en_b7837aa.pf_fragment → pagefind/fragment/en_3c637f9.pf_fragment b/pagefind/fragment/en_b7837aa.pf_fragment → pagefind/fragment/en_3c637f9.pf_fragment
diff --git a/pagefind/fragment/en_4012b68.pf_fragment b/pagefind/fragment/en_4012b68.pf_fragment
diff --git a/pagefind/fragment/en_4dbb28b.pf_fragment → pagefind/fragment/en_41b46f9.pf_fragment b/pagefind/fragment/en_4dbb28b.pf_fragment → pagefind/fragment/en_41b46f9.pf_fragment
diff --git a/pagefind/fragment/en_461577c.pf_fragment b/pagefind/fragment/en_461577c.pf_fragment
diff --git a/pagefind/fragment/en_4ae2f6f.pf_fragment b/pagefind/fragment/en_4ae2f6f.pf_fragment
diff --git a/pagefind/fragment/en_f8ce2bd.pf_fragment → pagefind/fragment/en_4bd392f.pf_fragment b/pagefind/fragment/en_f8ce2bd.pf_fragment → pagefind/fragment/en_4bd392f.pf_fragment
diff --git a/pagefind/fragment/en_9d86273.pf_fragment → pagefind/fragment/en_4e58882.pf_fragment b/pagefind/fragment/en_9d86273.pf_fragment → pagefind/fragment/en_4e58882.pf_fragment
diff --git a/pagefind/fragment/en_4e82ca6.pf_fragment b/pagefind/fragment/en_4e82ca6.pf_fragment
diff --git a/pagefind/fragment/en_4ed07be.pf_fragment b/pagefind/fragment/en_4ed07be.pf_fragment
diff --git a/pagefind/fragment/en_fa283f5.pf_fragment → pagefind/fragment/en_4fefca9.pf_fragment b/pagefind/fragment/en_fa283f5.pf_fragment → pagefind/fragment/en_4fefca9.pf_fragment
diff --git a/pagefind/fragment/en_aed6984.pf_fragment → pagefind/fragment/en_54768ea.pf_fragment b/pagefind/fragment/en_aed6984.pf_fragment → pagefind/fragment/en_54768ea.pf_fragment
diff --git a/pagefind/fragment/en_eff0ba7.pf_fragment → pagefind/fragment/en_5a788a5.pf_fragment b/pagefind/fragment/en_eff0ba7.pf_fragment → pagefind/fragment/en_5a788a5.pf_fragment
diff --git a/pagefind/fragment/en_dc509a2.pf_fragment → pagefind/fragment/en_5a90ec7.pf_fragment b/pagefind/fragment/en_dc509a2.pf_fragment → pagefind/fragment/en_5a90ec7.pf_fragment
diff --git a/pagefind/fragment/en_5acb6f9.pf_fragment b/pagefind/fragment/en_5acb6f9.pf_fragment
diff --git a/pagefind/fragment/en_25d2e2d.pf_fragment → pagefind/fragment/en_5e63d79.pf_fragment b/pagefind/fragment/en_25d2e2d.pf_fragment → pagefind/fragment/en_5e63d79.pf_fragment
diff --git a/pagefind/fragment/en_5598339.pf_fragment → pagefind/fragment/en_5f12424.pf_fragment b/pagefind/fragment/en_5598339.pf_fragment → pagefind/fragment/en_5f12424.pf_fragment
diff --git a/pagefind/fragment/en_60af333.pf_fragment b/pagefind/fragment/en_60af333.pf_fragment
diff --git a/pagefind/fragment/en_621257e.pf_fragment b/pagefind/fragment/en_621257e.pf_fragment
diff --git a/pagefind/fragment/en_ef6dbda.pf_fragment → pagefind/fragment/en_653bc75.pf_fragment b/pagefind/fragment/en_ef6dbda.pf_fragment → pagefind/fragment/en_653bc75.pf_fragment
diff --git a/pagefind/fragment/en_67a96c4.pf_fragment b/pagefind/fragment/en_67a96c4.pf_fragment
diff --git a/pagefind/fragment/en_6f94863.pf_fragment b/pagefind/fragment/en_6f94863.pf_fragment
diff --git a/pagefind/fragment/en_7061faf.pf_fragment b/pagefind/fragment/en_7061faf.pf_fragment
diff --git a/pagefind/fragment/en_46429aa.pf_fragment → pagefind/fragment/en_70cb8aa.pf_fragment b/pagefind/fragment/en_46429aa.pf_fragment → pagefind/fragment/en_70cb8aa.pf_fragment
diff --git a/pagefind/fragment/en_ada04e3.pf_fragment → pagefind/fragment/en_786f8a1.pf_fragment b/pagefind/fragment/en_ada04e3.pf_fragment → pagefind/fragment/en_786f8a1.pf_fragment
diff --git a/pagefind/fragment/en_78f0b58.pf_fragment b/pagefind/fragment/en_78f0b58.pf_fragment
diff --git a/pagefind/fragment/en_7a731d6.pf_fragment b/pagefind/fragment/en_7a731d6.pf_fragment
diff --git a/pagefind/fragment/en_38e4748.pf_fragment → pagefind/fragment/en_7fd53c7.pf_fragment b/pagefind/fragment/en_38e4748.pf_fragment → pagefind/fragment/en_7fd53c7.pf_fragment
diff --git a/pagefind/fragment/en_82d4e85.pf_fragment b/pagefind/fragment/en_82d4e85.pf_fragment
diff --git a/pagefind/fragment/en_841861a.pf_fragment b/pagefind/fragment/en_841861a.pf_fragment
diff --git a/pagefind/fragment/en_8592f96.pf_fragment b/pagefind/fragment/en_8592f96.pf_fragment
diff --git a/pagefind/fragment/en_c273741.pf_fragment → pagefind/fragment/en_8e96184.pf_fragment b/pagefind/fragment/en_c273741.pf_fragment → pagefind/fragment/en_8e96184.pf_fragment
diff --git a/pagefind/fragment/en_9084f74.pf_fragment b/pagefind/fragment/en_9084f74.pf_fragment
diff --git a/pagefind/fragment/en_93770d6.pf_fragment b/pagefind/fragment/en_93770d6.pf_fragment
diff --git a/pagefind/fragment/en_2eb6099.pf_fragment → pagefind/fragment/en_98e5d43.pf_fragment b/pagefind/fragment/en_2eb6099.pf_fragment → pagefind/fragment/en_98e5d43.pf_fragment
diff --git a/pagefind/fragment/en_9d4a9ba.pf_fragment b/pagefind/fragment/en_9d4a9ba.pf_fragment
diff --git a/pagefind/fragment/en_a7849e2.pf_fragment b/pagefind/fragment/en_a7849e2.pf_fragment
diff --git a/pagefind/fragment/en_9a0427b.pf_fragment → pagefind/fragment/en_a8bf723.pf_fragment b/pagefind/fragment/en_9a0427b.pf_fragment → pagefind/fragment/en_a8bf723.pf_fragment
diff --git a/pagefind/fragment/en_acbcb05.pf_fragment b/pagefind/fragment/en_acbcb05.pf_fragment
diff --git a/pagefind/fragment/en_b07bda4.pf_fragment b/pagefind/fragment/en_b07bda4.pf_fragment
diff --git a/pagefind/fragment/en_52b3b92.pf_fragment → pagefind/fragment/en_b4ce181.pf_fragment b/pagefind/fragment/en_52b3b92.pf_fragment → pagefind/fragment/en_b4ce181.pf_fragment
diff --git a/pagefind/fragment/en_baf21f9.pf_fragment b/pagefind/fragment/en_baf21f9.pf_fragment
diff --git a/pagefind/fragment/en_beb324c.pf_fragment b/pagefind/fragment/en_beb324c.pf_fragment
diff --git a/pagefind/fragment/en_cefe7ec.pf_fragment → pagefind/fragment/en_c12b51a.pf_fragment b/pagefind/fragment/en_cefe7ec.pf_fragment → pagefind/fragment/en_c12b51a.pf_fragment
diff --git a/pagefind/fragment/en_c2d4d53.pf_fragment b/pagefind/fragment/en_c2d4d53.pf_fragment
diff --git a/pagefind/fragment/en_c58d963.pf_fragment b/pagefind/fragment/en_c58d963.pf_fragment
diff --git a/pagefind/fragment/en_598450f.pf_fragment → pagefind/fragment/en_caa1ef5.pf_fragment b/pagefind/fragment/en_598450f.pf_fragment → pagefind/fragment/en_caa1ef5.pf_fragment
diff --git a/pagefind/fragment/en_ceaffbe.pf_fragment b/pagefind/fragment/en_ceaffbe.pf_fragment
diff --git a/pagefind/fragment/en_93bf52e.pf_fragment → pagefind/fragment/en_d5445aa.pf_fragment b/pagefind/fragment/en_93bf52e.pf_fragment → pagefind/fragment/en_d5445aa.pf_fragment
diff --git a/pagefind/fragment/en_dc8fa08.pf_fragment b/pagefind/fragment/en_dc8fa08.pf_fragment
diff --git a/pagefind/fragment/en_df8c459.pf_fragment b/pagefind/fragment/en_df8c459.pf_fragment
diff --git a/pagefind/fragment/en_e0f5c45.pf_fragment b/pagefind/fragment/en_e0f5c45.pf_fragment
diff --git a/pagefind/fragment/en_e188777.pf_fragment b/pagefind/fragment/en_e188777.pf_fragment
diff --git a/pagefind/fragment/en_71e1f51.pf_fragment → pagefind/fragment/en_e1e1a54.pf_fragment b/pagefind/fragment/en_71e1f51.pf_fragment → pagefind/fragment/en_e1e1a54.pf_fragment
diff --git a/pagefind/fragment/en_e956d6c.pf_fragment b/pagefind/fragment/en_e956d6c.pf_fragment
diff --git a/pagefind/fragment/en_ed4258a.pf_fragment b/pagefind/fragment/en_ed4258a.pf_fragment
diff --git a/pagefind/fragment/en_239c349.pf_fragment → pagefind/fragment/en_efde577.pf_fragment b/pagefind/fragment/en_239c349.pf_fragment → pagefind/fragment/en_efde577.pf_fragment
diff --git a/pagefind/fragment/en_e46fc8d.pf_fragment → pagefind/fragment/en_f1196d4.pf_fragment b/pagefind/fragment/en_e46fc8d.pf_fragment → pagefind/fragment/en_f1196d4.pf_fragment
diff --git a/pagefind/fragment/en_f4c5a84.pf_fragment b/pagefind/fragment/en_f4c5a84.pf_fragment
diff --git a/pagefind/fragment/en_14ed931.pf_fragment → pagefind/fragment/en_f4f4fbe.pf_fragment b/pagefind/fragment/en_14ed931.pf_fragment → pagefind/fragment/en_f4f4fbe.pf_fragment
diff --git a/pagefind/fragment/en_5088448.pf_fragment → pagefind/fragment/en_f839541.pf_fragment b/pagefind/fragment/en_5088448.pf_fragment → pagefind/fragment/en_f839541.pf_fragment
diff --git a/pagefind/fragment/en_1e59c06.pf_fragment → pagefind/fragment/en_f9f15c1.pf_fragment b/pagefind/fragment/en_1e59c06.pf_fragment → pagefind/fragment/en_f9f15c1.pf_fragment
diff --git a/pagefind/fragment/en_12f2023.pf_fragment → pagefind/fragment/en_fe9e9d7.pf_fragment b/pagefind/fragment/en_12f2023.pf_fragment → pagefind/fragment/en_fe9e9d7.pf_fragment
diff --git a/pagefind/pagefind-entry.json b/pagefind/pagefind-entry.json
@@ -1 +1 @@
-{"version":"1.1.1","languages":{"en":{"hash":"en_96bc1bc92d","wasm":"en","page_count":105}}}
+{"version":"1.1.1","languages":{"en":{"hash":"en_29727f8985","wasm":"en","page_count":105}}}
diff --git a/pagefind/pagefind.en_29727f8985.pf_meta b/pagefind/pagefind.en_29727f8985.pf_meta
diff --git a/pagefind/pagefind.en_96bc1bc92d.pf_meta b/pagefind/pagefind.en_96bc1bc92d.pf_meta
diff --git a/pattern/content-assembler/index.html b/pattern/content-assembler/index.html
diff --git a/pattern/content-assembler/index.html.br b/pattern/content-assembler/index.html.br
diff --git a/pattern/direct-messaging-service/index.html b/pattern/direct-messaging-service/index.html
diff --git a/pattern/direct-messaging-service/index.html.br b/pattern/direct-messaging-service/index.html.br
diff --git a/pattern/fhir-explorer/index.html b/pattern/fhir-explorer/index.html
diff --git a/pattern/fhir-explorer/index.html.br b/pattern/fhir-explorer/index.html.br
diff --git a/pattern/index.html b/pattern/index.html
diff --git a/pattern/index.html.br b/pattern/index.html.br
diff --git a/pattern/lectio/index.html b/pattern/lectio/index.html
diff --git a/pattern/lectio/index.html.br b/pattern/lectio/index.html.br
diff --git a/pattern/osquery/index.html b/pattern/osquery/index.html
diff --git a/pattern/osquery/index.html.br b/pattern/osquery/index.html.br
diff --git a/services/index.html b/services/index.html
diff --git a/services/index.html.br b/services/index.html.br