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1. fastx-mcp fastx-mcp Public

   MCP server for FASTA/FASTQ manipulation

   Python

2. bioCurator bioCurator Public

   Memory-augmented multi-agent system for scientific literature curation and analysis.

   Python

3. FischbachLab/nf-reads-profiler FischbachLab/nf-reads-profiler Public

   Nextflow pipeline to run Metaphlan3 and Humann3 on QC-ed reads.

   Nextflow 4 1

4. FischbachLab/ninjaMap FischbachLab/ninjaMap Public

   Compute strain abundance in a defined microbial community

   Python 10 2

5. tetramerFreqs/Binning tetramerFreqs/Binning Public

   Scripts required to calculate tetramer frequencies and create input files for ESOM. See: Dick, G.J., A. Andersson, B.J. Baker, S.S. Simmons, B.C. Thomas, A.P. Yelton, and J.F. Banfield (2009). Comm…

   Perl 17 12

6. LiteratureReviewBot LiteratureReviewBot Public

   Create a bot that scans pubmed literature and github for publications related to a topic and summarizes them in a table.

   Python