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Useful R functions for Echinacea Project lab activities.

Installation

You can install then use the devtools package to install the development version. Run this code:

install.packages("devtools")
library("devtools")
install_github("stuartWagenius/echinaceaLab")
library("echinaceaLab")
?echinaceaLab

Alternatively, you can download the zip ball and run utils:::menuInstallLocal() then library(echinaceaLab). This works on Windows machines.

Mac users can download the tar ball, decompress and run R CMD INSTALL on it.

For more information, visit the Echinacea Project website: http://echinaceaProject.org/.

NEWS

2022-12-19 New version 0.110. This package now depends on R (>=3.6.0) to support newer hh data, which are serialized objects in serialize/load version 3. Encoding is now UTF-8 for compatibility with Roxygen2. This R package now has dataframes of the heads harvested from experimental plots in 2021 & 2022. Other small fixes.

2022-03-30 This R package now has a dataframe of the heads harvested from p1, p2, p5, p7, p8, p9 in 2020. Function check.batch can now check batches from 2012 - 2020.

2020-05-14 This R package now has a function that will generate status and summary matrices for the coreExPt01 dataset.

2020-05-11 This R package now has a dataframe linking each cgPlaId to experimental plot (cgCd) and experiment name (expNm). It has three columns: cgPlaId, cgCd, and expNm.

2020-03-30 This R package now has functions to make graphs of plant characters in common garden experiments, create field check data frames for common garden experiments, create recheck, staple, and skip data frames for common garden experiments, and create remeasure data tables for common garden experiments.

2020-03-25 This R package now has a function to produce distributions of characters of Echinacea plants in common garden.

2020-02-18 RT made 5 changes to hh.2019.Rda: RT changed tt for AD-4061 and pos for AQ-4022, AJ-4012, AX-4041, and AC-4032. Find changes in Dropbox/CGData/140_reconcile/reconcile2019/reconcile_work/make.hh.2019.R

2020-01-16 This R package now has a dataframe of the heads harvested from p1, p2, p7, p8, and p9 in 2018 and 2019. We harvested 2011 heads in 2018 and 1186 heads in 2019. Function check.batch can now check batches from 2012 - 2019.

2018-05-10 Function estimateSeedSet now produces correct estimates of seed set based on the sample method. The argument names are somewhat easier to understand.

2018-03-13 This R package now has a dataframe of the heads harvested from p1 and p2 in 2017. Function check.batch can now check batches from 2012 - 2017. Function convertDicom was updated so that the image magick convert notation and quality can be adjusted.

2017-05-26 This R package now has a dataframe of the heads harvested from p1 and p2 in 2016. Function check.batch can now check batches from 2012 - 2016. Hmm, many improvements and additions in 2016 were not listed here as news.

2015-04-15 This R package now has a dataframe of the heads harvested from p1 and p2 in 2014. Function check.batch can now check batches from 2012, 2013 and 2014.

2014-02-28 This R package now has a dataframe of the heads harvested from cg1 in 2013. Function check.batch can now check batches from 2012 and 2013.

2013-04-12 This R package now has functions for managing scan files, including checking validity of filenames compared to the 2012 harvest list.

2013-04-12 This R package now has a dataframe of the heads harvested from cg1 in 2012.

2013-04-11 This R package now has documentation for each function, at least a little bit.

2013-01-12 This R package now has a function to visualize growth chamber settings and performance.

2012-12-11 This R package now has functions to manage datasets with twist-tie fields.

2012-11-30 This R package has functions to manage mass files generated by our automated Mettler-Toledo balance.

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useful functions for the Echinacea Project

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