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API/DOC/MAINT: update for experimental use #100

Merged
merged 32 commits into from
Mar 31, 2021
Merged

API/DOC/MAINT: update for experimental use #100

merged 32 commits into from
Mar 31, 2021

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stsievert
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@stsievert stsievert commented Mar 8, 2021

What does this PR implement?
I am in the process of fine-tuning Salmon performance to match NEXT's performance. So, that means I am explicitly mirror a NEXT experiment in salmon-experiments.

This PR makes the following changes:

  • Adds new alien-eggs dataset, and updates the noise model to mirror the NEXT paper.
  • Makes some changes around resetting (in hopes of solving Visiting /reset doesn't restart adaptive algorithms #82)
  • Does not post queries with NaN score to the database.
  • Better chooses max_epochs for adaptive runners.
  • Refreshes documentation (better + more complete API docs, small fixes)
  • Updates documentation with experiment that changes the response rate of Salmon.

Reference issues/PRs
#82, resetting.

@stsievert stsievert changed the title MAINT: fine-tune Salmon performance API/DOC/MAINT: update for experimental use Mar 31, 2021
@stsievert stsievert merged commit 0b9509b into master Mar 31, 2021
@stsievert stsievert deleted the offline-fixes branch March 31, 2021 19:46
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