GxG

GenomicRanges-based classes for representing, querying, and manipulating matrices of genomic data (ie a map of pairs of genomic coordinates to a numeric value). Applications include visualization and analysis of Hi-C contact maps, barcode overlap in 10X, microhomology heatmaps, pairwise LD, and epistasis.

Install

1. Install R-3.5

2. Install devtools

install.packages('devtools')

2. Install gGnome and dependent packages

## allows dependencies that throw warnings to install
Sys.setenv(R_REMOTES_NO_ERRORS_FROM_WARNINGS = TRUE)

devtools::install_github('mskilab/GxG')

Documentation

GxG Tutorial

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Attributions

Marcin Imielinski - Assistant Professor, Weill Cornell Medicine Core Member, New York Genome Center.

Funding sources