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describe sourmash estimates and their correlations with read mapping rates #1881

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ctb opened this issue Mar 12, 2022 · 2 comments · Fixed by #2184
Closed

describe sourmash estimates and their correlations with read mapping rates #1881

ctb opened this issue Mar 12, 2022 · 2 comments · Fixed by #2184
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ctb commented Mar 12, 2022

documentation updates needed:

we now have a lot of good evidence that f_match correlates with the fraction of genome that will be covered by mapped reads, per the sourmash gather/minimum metagenome covers preprint. It's a little harder to talk about what that means on the metagenome side tho.

and, per #1833, we should mention that the sourmash gather abundances (median_abund, average_abund) are correlated with the fraction of reads that will map to that genome; and that sourmash gather summary information for weighted fraction correlations with % of total reads that will map (see #1818).

@ctb ctb added the doc documentation content or issues label Mar 12, 2022
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ctb commented Mar 12, 2022

ref dib-lab/genome-grist#167

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ctb commented Aug 2, 2022

ref #2170

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