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explore lat-lon-parser when normalizing metadata #5

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luizirber opened this issue Dec 19, 2023 · 2 comments
Open

explore lat-lon-parser when normalizing metadata #5

luizirber opened this issue Dec 19, 2023 · 2 comments

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@luizirber
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https://pypi.org/project/lat-lon-parser/

#4 fixed variable name when normalizing metadata, but we are still missing lat/lon combinations in the values because it is a freeform text field...

(thanks @rchikhi for the suggestion!)
luizirber added a commit that referenced this issue Jan 21, 2024
@luizirber
chore: bootstrap releases for path: . (#5)
b6d4f3e 
Configuring release-please for path: .
@luizirber
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Also relevant: changes on country/geo_loc_name coming to Genbank and SRA:
https://ncbiinsights.ncbi.nlm.nih.gov/2023/12/14/update-genbank-qualifier/

@luizirber
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This is the lat lon parser from metaseek:
https://github.com/MetaSeek-Sequencing-Data-Discovery/metaseek/blob/fc6853640921ca4853b3d4ed3d3354855983db11/server/scrapers/shared.py#L3
which might be useful to harmonize lat/lon, will try out in https://github.com/luizirber/2024-07-26-sra-metadata/

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