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Extaction of pmid - doi relationship for a given journal using EuropePMC

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pmidoi

Extaction of pmid - doi relationship for a given journal using EuropePMC

Activate virtual environment:

python3 -m venv .venv
source .venv/bin/activate

Install dependencies:

pip install -r requirements.txt

Test app:

python -m test.tester

Install app:

python -m setup install

Run the analysis for the journal with title "My Journal" and save the results as tab-delimted text into destination.txt:

listids "My Journal" destination.txt

Example:

$ listids "Molecular Systems Biology" msb.txt

total: 1086 | page: 1 from 2   
total: 1086 | page: 2 from 2   


Extracted ids from 1086 articles:

- 0 with no doi
- 19 with no pmid
- 0 with no doi and no pmid
- 1067 with both pmid and doi

Results saved to msb.txt.

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