Apply ruff check and format redux

.pre-commit-config.yaml

@@ -1,12 +1,9 @@
 repos:
--   repo: https://github.com/psf/black
-    rev: 23.9.1
-    hooks:
-    - id: black
-      language_version: "python3.10"
-
--   repo: https://github.com/charliermarsh/ruff-pre-commit
-    rev: v0.0.292
-    hooks:
-    -   id: ruff
-        language_version: "python3.10"
+- repo: https://github.com/astral-sh/ruff-pre-commit
+  # Ruff version.
+  rev: v0.1.5
+  hooks:
+    # Run the linter.
+    - id: ruff
+    # Run the formatter.
+    - id: ruff-format

agasc/scripts/supplement_diff.py

@@ -18,7 +18,9 @@
 from astropy.io import ascii
 
 
-def read_file(filename, exclude=[]):
+def read_file(filename, exclude=None):
+    if exclude is None:
+        exclude = []
     formats = {
         "agasc_versions": {k: "{:>21s}" for k in ["mags", "obs", "bad", "supplement"]},
         "last_updated": {k: "{:>21s}" for k in ["mags", "obs", "bad", "supplement"]},
@@ -36,7 +38,7 @@ def read_file(filename, exclude=[]):
                 continue
             node = h5.get_node(f"/{name}")
             t = table.Table(node[:])
-            t.convert_bytestring_to_unicode
+            t.convert_bytestring_to_unicode()
             s = StringIO()
             ascii.write(t, s, format="fixed_width", formats=formats.get(name, {}))
             s.seek(0)

agasc/scripts/supplement_tasks.py

@@ -21,11 +21,10 @@
 from cxotime import CxoTime
 
 AGASC_DATA = Path(os.environ["SKA"]) / "data" / "agasc"
+SENDER = f"{getpass.getuser()}@{platform.uname()[1]}"
 
 
-def email_promotion_report(
-    filenames, destdir, to, sender=f"{getpass.getuser()}@{platform.uname()[1]}"
-):
+def email_promotion_report(filenames, destdir, to, sender=SENDER):
     date = CxoTime().date[:14]
     filenames = "- " + "\n- ".join([str(f) for f in filenames])
 

agasc/supplement/magnitudes/mag_estimate_report.py

@@ -25,6 +25,7 @@
     loader=jinja2.PackageLoader("agasc.supplement.magnitudes", "templates"),
     autoescape=jinja2.select_autoescape(["html", "xml"]),
 )
+SENDER = f"{getpass.getuser()}@{platform.uname()[1]}"
 
 logger = logging.getLogger("agasc.supplement")
 
@@ -503,8 +504,9 @@ def plot_agasc_id_single(
                 ylims_set = True
         if ylim == "max" or not ylims_set:
             if np.any(ok_ylim):
-                ymin, ymax = np.min(telem["mags"][ok_ylim]), np.max(
-                    telem["mags"][ok_ylim]
+                ymin, ymax = (
+                    np.min(telem["mags"][ok_ylim]),
+                    np.max(telem["mags"][ok_ylim]),
                 )
             else:
                 ymin, ymax = np.min(telem["mags"]), np.max(telem["mags"])
@@ -939,9 +941,7 @@ def plot_set(self, agasc_id, args, telem=None, filename=None):
         return fig
 
 
-def email_bad_obs_report(
-    bad_obs, to, sender=f"{getpass.getuser()}@{platform.uname()[1]}"
-):
+def email_bad_obs_report(bad_obs, to, sender=SENDER):
     date = CxoTime().date[:14]
     message = JINJA2.get_template("email_report.txt")
 

agasc/supplement/magnitudes/star_obs_catalogs.py

@@ -55,6 +55,6 @@ def load(tstop=None):
     """
     Populate this module's global variable STARS_OBS.
     """
-    global STARS_OBS
+    global STARS_OBS  # noqa: PLW0603
     if STARS_OBS is None:
         STARS_OBS = get_star_observations(stop=tstop)

agasc/supplement/magnitudes/update_mag_supplement.py

@@ -49,7 +49,9 @@ def level0_archive_time_range():
         return CxoTime(t_stop).date, CxoTime(t_start).date
 
 
-def get_agasc_id_stats(agasc_ids, obs_status_override={}, tstop=None, no_progress=None):
+def get_agasc_id_stats(
+    agasc_ids, obs_status_override=None, tstop=None, no_progress=None
+):
     """
     Call mag_stats.get_agasc_id_stats for each AGASC ID
 
@@ -67,6 +69,8 @@ def get_agasc_id_stats(agasc_ids, obs_status_override={}, tstop=None, no_progres
 
     from agasc.supplement.magnitudes import mag_estimate
 
+    if obs_status_override is None:
+        obs_status_override = {}
     fails = []
     obs_stats = []
     agasc_stats = []

agasc/tests/test_agasc_2.py

@@ -238,7 +238,7 @@ def _test_agasc(ra, dec, ref_stars, version="1p7"):
             if adj_mag < 11.5 * 0.99:
                 # Allow for loss of precision in output of mp_get_agasc
                 print("Bad star", agasc_id, rad, adj_mag, bad_is_star1)
-                assert False
+                raise AssertionError()
 
 
 def test_basic():

agasc/tests/test_obs_status.py

@@ -908,7 +908,7 @@ def mock_write(fname, *args, **kwargs):
         monkeypatch.setattr(
             table.Table,
             "write",
-            lambda *args, **kwargs: mock_write(filename, *args, **kwargs),
+            lambda *args, **kwargs: mock_write(filename, *args, **kwargs),  # noqa: B023
         )
         status = update_supplement.parse_args(filename=filename)
         print(filename)
@@ -927,7 +927,7 @@ def mock_write(*args, **kwargs):
         if "path" in kwargs and kwargs["path"] == "bad":
             mock_write.n_calls += 1
             ref = table.Table()
-            assert False
+            raise AssertionError()
         if "path" in kwargs and kwargs["path"] == "obs":
             mock_write.n_calls += 1
             ref = table.Table(

ruff.toml

@@ -1,117 +1,55 @@
-# Copy ruff settings from pandas
-line-length = 100
+# Copied originally from pandas
 target-version = "py310"
+
 # fix = true
 unfixable = []
 
 select = [
-  # isort
-  "I",
-  # pyflakes
-  "F",
-  # pycodestyle
-  "E", "W",
-  # flake8-2020
-  "YTT",
-  # flake8-bugbear
-  "B",
-  # flake8-quotes
-  "Q",
-  # flake8-debugger
-  "T10",
-  # flake8-gettext
-  "INT",
-  # pylint
-  "PLC", "PLE", "PLR", "PLW",
-  # misc lints
-  "PIE",
-  # flake8-pyi
-  "PYI",
-  # tidy imports
-  "TID",
-  # implicit string concatenation
-  "ISC",
-  # type-checking imports
-  "TCH",
-  # comprehensions
-  "C4",
-  # pygrep-hooks
-  "PGH"
+  "I", # isort
+  "F", # pyflakes
+  "E", "W", # pycodestyle
+  "YTT", # flake8-2020
+  "B", # flake8-bugbear
+  "Q", # flake8-quotes
+  "T10", # flake8-debugger
+  "INT", # flake8-gettext
+  "PLC", "PLE", "PLR", "PLW", # pylint
+  "PIE", # misc lints
+  "PYI", # flake8-pyi
+  "TID", # tidy imports
+  "ISC", # implicit string concatenation
+  "TCH", # type-checking imports
+  "C4", # comprehensions
+  "PGH" # pygrep-hooks
 ]
 
 ignore = [
-  # space before : (needed for how black formats slicing)
-  # "E203",  # not yet implemented
-  # module level import not at top of file
-  "E402",
-  # do not assign a lambda expression, use a def
-  "E731",
-  # line break before binary operator
-  # "W503",  # not yet implemented
-  # line break after binary operator
-  # "W504",  # not yet implemented
-  # controversial
-  "B006",
-  # controversial?: Loop control variable not used within loop body
-  # "B007",
-  # controversial
-  "B008",
-  # setattr is used to side-step mypy
-  "B009",
-  # getattr is used to side-step mypy
-  "B010",
-  # tests use assert False
-  "B011",
-  # tests use comparisons but not their returned value
-  "B015",
-  # false positives
-  "B019",
-  # Loop control variable overrides iterable it iterates
-  "B020",
-  # Function definition does not bind loop variable
-  "B023",
-  # No explicit `stacklevel` keyword argument found
-  "B028",
-  # Functions defined inside a loop must not use variables redefined in the loop
-  # "B301",  # not yet implemented
-  # Only works with python >=3.10
-  "B905",
-  # Too many arguments to function call
-  "PLR0913",
-  # Too many returns
-  "PLR0911",
-  # Too many branches
-  "PLR0912",
-  # Too many statements
-  "PLR0915",
-  # Redefined loop name
-  "PLW2901",
-  # Global statements are discouraged
-  "PLW0603",
-  # Docstrings should not be included in stubs
-  "PYI021",
-  # No builtin `eval()` allowed
-  "PGH001",
-  # compare-to-empty-string
-  "PLC1901",
-  # Use typing_extensions.TypeAlias for type aliases
-  # "PYI026",  # not yet implemented
-  # Use "collections.abc.*" instead of "typing.*" (PEP 585 syntax)
-  # "PYI027",  # not yet implemented
-  # while int | float can be shortened to float, the former is more explicit
-  # "PYI041",  # not yet implemented
+  "ISC001", # Disable this for compatibility with ruff format
+  "B028", # No explicit `stacklevel` keyword argument found
+  "B905", # `zip()` without an explicit `strict=` parameter
+  "E402", # module level import not at top of file
+  "E731", # do not assign a lambda expression, use a def
+  "PLC1901", # compare-to-empty-string
+  "PLR0911", # Too many returns
+  "PLR0912", # Too many branches
+  "PLR0913", # Too many arguments to function call
+  "PLR2004", # Magic number
+  "PYI021", # Docstrings should not be included in stubs
+  "PLR0915", # Too many statements
+]
 
-  # Additional checks that don't pass yet
-  # Useless statement
-  "B018",
-  # Within an except clause, raise exceptions with ...
-  "B904",
-  # Magic number
-  "PLR2004",
-  # Consider `elif` instead of `else` then `if` to remove indentation level
-  "PLR5501",
+# TODO : fix these and stop ignoring. Commented out ones are common and OK to except.
+extend-ignore = [
+  "PGH004", # Use specific rule codes when using `noqa`
 ]
 
-exclude = [
-  "docs/",
+extend-exclude = [
+  "docs",
+  "validate",
 ]
+
+[pycodestyle]
+max-line-length = 100 # E501 reports lines that exceed the length of 100.
+
+[lint.extend-per-file-ignores]
+"__init__.py" = ["E402", "F401", "F403"]